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-Recent 3DEM papers
-Architecture and self-assembly of the jumbo bacteriophage nuclear shell.
Nature, Vol. 608, Issue 7922, Page 429-435, Year 2022
Thomas G Laughlin / Amar Deep / Amy M Prichard / Christian Seitz / Yajie Gu / Eray Enustun / Sergey Suslov / Kanika Khanna / Erica A Birkholz / Emily Armbruster ...Thomas G Laughlin / Amar Deep / Amy M Prichard / Christian Seitz / Yajie Gu / Eray Enustun / Sergey Suslov / Kanika Khanna / Erica A Birkholz / Emily Armbruster / J Andrew McCammon / Rommie E Amaro / Joe Pogliano / Kevin D Corbett / Elizabeth Villa
Methods: EM (subtomogram averaging) / EM (single particle)
-PTX3 structure determination using a hybrid cryoelectron microscopy and AlphaFold approach offers insights into ligand binding and complement activation.
Proc Natl Acad Sci U S A, Vol. 119, Issue 33, Page e2208144119, Year 2022
Dylan P Noone / Douwe J Dijkstra / Teun T van der Klugt / Peter A van Veelen / Arnoud H de Ru / Paul J Hensbergen / Leendert A Trouw / Thomas H Sharp
Methods: EM (single particle)
+Reversible structural changes in the influenza hemagglutinin precursor at membrane fusion pH.
Proc Natl Acad Sci U S A, Vol. 119, Issue 33, Page e2208011119, Year 2022
Eva Garcia-Moro / Jie Zhang / Lesley J Calder / Nick R Brown / Steven J Gamblin / John J Skehel / Peter B Rosenthal
Methods: EM (single particle)
+Mechanistic details of CRISPR-associated transposon recruitment and integration revealed by cryo-EM.
Proc Natl Acad Sci U S A, Vol. 119, Issue 32, Page e2202590119, Year 2022
Jung-Un Park / Amy Wei-Lun Tsai / Tiffany H Chen / Joseph E Peters / Elizabeth H Kellogg
Methods: EM (helical sym.) / EM (single particle)
+BCL10 Mutations Define Distinct Dependencies Guiding Precision Therapy for DLBCL.
Cancer Discov, Vol. 12, Issue 8, Page 1922-1941, Year 2022
Min Xia / Liron David / Matt Teater / Johana Gutierrez / Xiang Wang / Cem Meydan / Andrew Lytle / Graham W Slack / David W Scott / Ryan D Morin ...Min Xia / Liron David / Matt Teater / Johana Gutierrez / Xiang Wang / Cem Meydan / Andrew Lytle / Graham W Slack / David W Scott / Ryan D Morin / Ozlem Onder / Kojo S J Elenitoba-Johnson / Nahuel Zamponi / Leandro Cerchietti / Tianbao Lu / Ulrike Philippar / Lorena Fontan / Hao Wu / Ari M Melnick
Methods: EM (helical sym.)
-About EM Navigator
-Feb 9, 2022. New format data for meta-information of EMDB entries
New format data for meta-information of EMDB entries
- Version 3 of the EMDB header file is now the official format.
- The previous official version 1.9 will be removed from the archive.
Related info.:EMDB header
External links:wwPDB to switch to version 3 of the EMDB data model
-Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels
Nobel Prize for mechanically activated and temperature-gated ion channels
- The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
- EM Navigator can help to find cryo-EM structure data by both pioneers.
+Aug 12, 2020. Covid-19 info
New page: Covid-19 featured information page in EM Navigator.
Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data
+Mar 5, 2020. Novel coronavirus structure data
Novel coronavirus structure data
- International Committee on Taxonomy of Viruses (ICTV) defined the short name of the 2019 coronavirus as "SARS-CoV-2".
- The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2 - nature microbiology
- In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info
+Jul 5, 2019. Downlodablable text data
Downlodablable text data
Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.
|EMN Search||search result||CSV, TSV, or JSON|
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Related info.:EMN Search / EMN Statistics
3D electron microscopy data browser
- EM Navigator is a browser for 3D electron microscopy (3D-EM) data of biological molecules and assemblies.
- It provides EMDB-PDB cross-search, statistical information, and links to similar structures.
- You can easily check the latest EM structural data and structural papers.
Related info.:EMDB / PDB / PDBj / Q: What are the data sources of EM Navigator? / EMN Search / EMN Papers / EMN Gallery / EMN Statistics / Changes in new EM Navigator and Yorodumi