eF-site ID 7kj4-D
PDB Code 7kj4
Chain D

click to enlarge
Title SARS-CoV-2 Spike Glycoprotein with three ACE2 Bound
Classification VIRAL PROTEIN/HYDROLASE
Compound Spike glycoprotein
Source (ACE2_HUMAN)
Sequence D:  IEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQ
NMNNAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQAL
QQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQE
CLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRPLY
EEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRG
QLIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYPSYISPIG
CLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQ
AWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQ
KAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQ
YDMAYAAQPFLLRNGANEGFHEAVGEIMSLSAATPKHLKS
IGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWR
WMVFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYCDP
ASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLH
KCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAKNMN
VRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPY
Description (1)  Spike glycoprotein


Functional site

1) chain D
residue 371-380
type prosite
sequence TAHHEMGHIQ
description ZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. TAHHEMGHIQ
source prosite : PS00142

2) chain D
residue 169
type BINDING
sequence R
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895, ECO:0000305|PubMed:19021774
source Swiss-Prot : SWS_FT_FI3

3) chain D
residue 477
type BINDING
sequence W
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895, ECO:0000305|PubMed:19021774
source Swiss-Prot : SWS_FT_FI3

4) chain D
residue 481
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895, ECO:0000305|PubMed:19021774
source Swiss-Prot : SWS_FT_FI3

5) chain D
residue 53
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000305|PubMed:14754895
source Swiss-Prot : SWS_FT_FI6

6) chain D
residue 322
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000305|PubMed:14754895
source Swiss-Prot : SWS_FT_FI6

7) chain D
residue 273
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:14754895
source Swiss-Prot : SWS_FT_FI4

8) chain D
residue 345
type BINDING
sequence H
description BINDING => ECO:0000305|PubMed:14754895
source Swiss-Prot : SWS_FT_FI4

9) chain D
residue 515
type BINDING
sequence Y
description BINDING => ECO:0000305|PubMed:14754895
source Swiss-Prot : SWS_FT_FI4

10) chain D
residue 374
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895
source Swiss-Prot : SWS_FT_FI5

11) chain D
residue 378
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895
source Swiss-Prot : SWS_FT_FI5

12) chain D
residue 402
type BINDING
sequence E
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895
source Swiss-Prot : SWS_FT_FI5

13) chain D
residue 90
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:14754895, ECO:0000269|PubMed:15084671, ECO:0000269|PubMed:19901337
source Swiss-Prot : SWS_FT_FI7

14) chain D
residue 546
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:14754895, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19901337
source Swiss-Prot : SWS_FT_FI9

15) chain D
residue 375
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000305|PubMed:14754895, ECO:0000305|PubMed:27217402
source Swiss-Prot : SWS_FT_FI1

16) chain D
residue 505
type ACT_SITE
sequence H
description Proton donor => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000305|PubMed:14754895
source Swiss-Prot : SWS_FT_FI2

17) chain D
residue 103
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:14754895
source Swiss-Prot : SWS_FT_FI8

18) chain D
residue 432
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:14754895
source Swiss-Prot : SWS_FT_FI8


Display surface

Download
Links