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eF-site ID
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7cdj-EHL |
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PDB Code
|
7cdj |
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Chain
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E, H, L |
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click to enlarge
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Title
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Crystal structure of SARS-CoV-2 antibody P2C-1A3 with RBD |
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Classification
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VIRAL PROTEIN |
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Compound
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Spike protein S1 |
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Source
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(7CDJ) |
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Sequence
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E: |
TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSA
SFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP
GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYL
YRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL
QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG
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| H: |
QVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQA
PGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLY
LQMNSLRAEDTAVYYCARDFSHQQLVPSWGQGTLVTVSSA
STKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALT
SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNH
KPSNTKVDKKVE
|
| L: |
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKP
GKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQP
EDFATYYCQQLNSYPLTFGGGTKVEIKRTVAAPSVFIFPP
SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG
LSSPVTKSFNRGE
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Description
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Functional site
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1)
|
chain |
L |
| residue |
190-196 |
| type |
prosite |
| sequence |
YACEVTH
|
| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH
|
| source |
prosite : PS00290
|
|
|
2)
|
chain |
H |
| residue |
200-206 |
| type |
prosite |
| sequence |
YICNVNH
|
| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH
|
| source |
prosite : PS00290
|
|
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3)
|
chain |
E |
| residue |
343 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942
|
| source |
Swiss-Prot : SWS_FT_FI3
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