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eF-site ID
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6zcz-EFHL |
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PDB Code
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6zcz |
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Chain
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E, F, H, L |
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click to enlarge
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Title
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Crystal structure of receptor binding domain of SARS-CoV-2 Spike glycoprotein in ternary complex with EY6A Fab and a nanobody. |
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Classification
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VIRAL PROTEIN |
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Compound
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Spike protein S1 |
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Source
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(6ZCZ) |
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Sequence
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E: |
TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSA
SFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP
GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYL
YRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL
QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGK
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| F: |
VQLVESGGGLMQAGGSLRLSCAVSGRTFSTAAMGWFRQAP
GKEREFVAAIRWSGGSAYYADSVKGRFTISRDKAKNTVYL
QMNSLKYEDTAVYYCAQTHYVSYLLSDYATWPYDYWGQGT
QVTVS
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| H: |
EVQLVESGGGVVQPGRSLRLSCAASAFTFSSYDMHWVRQA
PGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY
LQMNSLRAEDTAVYYCAKDGGKLWVYYFDYWGQGTLVTVS
SASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSG
ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICN
VNHKPSNTKVDKRVEPKSC
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| L: |
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKP
GKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP
EDFATYYCQQSYSTLALTFGGGTKVEIKRTVAAPSVFIFP
PSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS
QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ
GLSSPVTKSFNRGEC
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Description
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Functional site
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1)
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chain |
H |
| residue |
202-208 |
| type |
prosite |
| sequence |
YICNVNH
|
| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH
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| source |
prosite : PS00290
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2)
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chain |
L |
| residue |
193-199 |
| type |
prosite |
| sequence |
YACEVTH
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| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH
|
| source |
prosite : PS00290
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3)
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chain |
E |
| residue |
343 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942
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| source |
Swiss-Prot : SWS_FT_FI1
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