eF-site ID 6xc2-AHLXYZ
PDB Code 6xc2
Chain A, H, L, X, Y, Z

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Title Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC12.1
Classification IMMUNE SYSTEM/VIRAL PROTEIN
Compound Spike protein S1
Source (6XC2)
Sequence A:  NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSAS
FSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG
QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVNYNYLYRL
FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSY
GFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK
H:  EVQLVESGGGLIQPGGSLRLSCAASGLTVSSNYMSWVRQA
PGKGLEWVSVIYSGGSTFYADSVKGRFTISRDNSKNTLYL
QMNSLRAEDTAVYYCARDLDVYGLDVWGQGTTVTVSSAST
KGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALT
SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNH
KPSNTKVDKKVEPKS
L:  DIVMTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKP
GKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQP
EDFATYYCQQLNSYPPKFTFGPGTKVEIKRTVAAPSVFIF
PPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN
SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTH
QGLSSPVTKSFNRGE
X:  EVQLVESGGGLIQPGGSLRLSCAASGLTVSSNYMSWVRQA
PGKGLEWVSVIYSGGSTFYADSVKGRFTISRDNSKNTLYL
QMNSLRAEDTAVYYCARDLDVYGLDVWGQGTTVTVSSAST
KGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALT
SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNH
KPSNTKVDKKVEPKS
Y:  DIVMTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKP
GKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQP
EDFATYYCQQLNSYPPKFTFGPGTKVEIKRTVAAPSVFIF
PPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN
SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTH
QGLSSPVTKSFNRGE
Z:  NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSAS
FSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG
QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVNYNYLYRL
FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSY
GFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK
Description


Functional site

1) chain H
residue 195-201
type prosite
sequence YICNVNH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH
source prosite : PS00290

2) chain L
residue 194-200
type prosite
sequence YACEVTH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH
source prosite : PS00290

3) chain A
residue 343
type CARBOHYD
sequence N
description N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942
source Swiss-Prot : SWS_FT_FI3

4) chain Z
residue 343
type CARBOHYD
sequence N
description N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942
source Swiss-Prot : SWS_FT_FI3


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