eF-site ID 6xbi-B
PDB Code 6xbi
Chain B

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Title Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW248
Classification HYDROLASE/HYDROLASE INHIBITOR
Compound 3C-like proteinase
Source (6XBI)
Sequence B:  HMSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYC
PRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVI
GHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACY
NGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVS
FCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDT
TITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYN
YEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNG
RTILGSALLEDEFTPFDVVRQCSG
Description


Functional site

1) chain B
residue 105
type
sequence R
description binding site for residue GOL A 501
source : AC1

2) chain B
residue 107
type
sequence Q
description binding site for residue GOL A 501
source : AC1

3) chain B
residue 228
type
sequence N
description binding site for residue GOL A 502
source : AC2

4) chain B
residue 180
type
sequence N
description binding site for residue NA A 503
source : AC3

5) chain B
residue 6
type
sequence M
description binding site for residue DMS B 501
source : AC4

6) chain B
residue 7
type
sequence A
description binding site for residue DMS B 501
source : AC4

7) chain B
residue 8
type
sequence F
description binding site for residue DMS B 501
source : AC4

8) chain B
residue 298
type
sequence R
description binding site for residue DMS B 501
source : AC4

9) chain B
residue 41
type ACT_SITE
sequence H
description For 3CL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00772, ECO:0000305|PubMed:32198291
source Swiss-Prot : SWS_FT_FI1

10) chain B
residue 145
type ACT_SITE
sequence C
description Nucleophile; for 3CL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00772, ECO:0000269|PubMed:32198291
source Swiss-Prot : SWS_FT_FI2


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