eF-site ID 6w1u-b
PDB Code 6w1u
Chain b

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Title RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.09 Angstrom resolution
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence b:  GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYE
LATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSIT
GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLE
LFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL
FGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAH
HIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSS
IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQ
QEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAK
GGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPA
FFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF
YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDG
IFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSG
IDPELSPEQVEWGFYQKVGDVTTRR
Description


Functional site

1) chain b
residue 75
type
sequence W
description binding site for residue DGD A 415
source : AD6

2) chain b
residue 37
type
sequence M
description binding site for residue BCR T 101
source : AM3

3) chain b
residue 189
type
sequence G
description binding site for residue CLA b 601
source : AO9

4) chain b
residue 190
type
sequence F
description binding site for residue CLA b 601
source : AO9

5) chain b
residue 201
type
sequence H
description binding site for residue CLA b 601
source : AO9

6) chain b
residue 208
type
sequence V
description binding site for residue CLA b 601
source : AO9

7) chain b
residue 247
type
sequence F
description binding site for residue CLA b 601
source : AO9

8) chain b
residue 68
type
sequence R
description binding site for residue CLA b 602
source : AP1

9) chain b
residue 69
type
sequence L
description binding site for residue CLA b 602
source : AP1

10) chain b
residue 146
type
sequence A
description binding site for residue CLA b 602
source : AP1

11) chain b
residue 150
type
sequence C
description binding site for residue CLA b 602
source : AP1

12) chain b
residue 153
type
sequence F
description binding site for residue CLA b 602
source : AP1

13) chain b
residue 201
type
sequence H
description binding site for residue CLA b 602
source : AP1

14) chain b
residue 202
type
sequence H
description binding site for residue CLA b 602
source : AP1

15) chain b
residue 252
type
sequence V
description binding site for residue CLA b 602
source : AP1

16) chain b
residue 262
type
sequence T
description binding site for residue CLA b 602
source : AP1

17) chain b
residue 33
type
sequence W
description binding site for residue CLA b 603
source : AP2

18) chain b
residue 61
type
sequence F
description binding site for residue CLA b 603
source : AP2

19) chain b
residue 65
type
sequence F
description binding site for residue CLA b 603
source : AP2

20) chain b
residue 68
type
sequence R
description binding site for residue CLA b 603
source : AP2

21) chain b
residue 145
type
sequence L
description binding site for residue CLA b 603
source : AP2

22) chain b
residue 149
type
sequence L
description binding site for residue CLA b 603
source : AP2

23) chain b
residue 245
type
sequence V
description binding site for residue CLA b 603
source : AP2

24) chain b
residue 248
type
sequence A
description binding site for residue CLA b 603
source : AP2

25) chain b
residue 249
type
sequence A
description binding site for residue CLA b 603
source : AP2

26) chain b
residue 252
type
sequence V
description binding site for residue CLA b 603
source : AP2

27) chain b
residue 451
type
sequence F
description binding site for residue CLA b 603
source : AP2

28) chain b
residue 455
type
sequence H
description binding site for residue CLA b 603
source : AP2

29) chain b
residue 458
type
sequence F
description binding site for residue CLA b 603
source : AP2

30) chain b
residue 27
type
sequence T
description binding site for residue CLA b 604
source : AP3

31) chain b
residue 30
type
sequence V
description binding site for residue CLA b 604
source : AP3

32) chain b
residue 34
type
sequence A
description binding site for residue CLA b 604
source : AP3

33) chain b
residue 62
type
sequence V
description binding site for residue CLA b 604
source : AP3

34) chain b
residue 65
type
sequence F
description binding site for residue CLA b 604
source : AP3

35) chain b
residue 66
type
sequence M
description binding site for residue CLA b 604
source : AP3

36) chain b
residue 68
type
sequence R
description binding site for residue CLA b 604
source : AP3

37) chain b
residue 96
type
sequence V
description binding site for residue CLA b 604
source : AP3

38) chain b
residue 100
type
sequence H
description binding site for residue CLA b 604
source : AP3

39) chain b
residue 205
type
sequence A
description binding site for residue CLA b 604
source : AP3

40) chain b
residue 69
type
sequence L
description binding site for residue CLA b 605
source : AP4

41) chain b
residue 70
type
sequence G
description binding site for residue CLA b 605
source : AP4

42) chain b
residue 91
type
sequence W
description binding site for residue CLA b 605
source : AP4

43) chain b
residue 96
type
sequence V
description binding site for residue CLA b 605
source : AP4

44) chain b
residue 102
type
sequence V
description binding site for residue CLA b 605
source : AP4

45) chain b
residue 103
type
sequence L
description binding site for residue CLA b 605
source : AP4

46) chain b
residue 149
type
sequence L
description binding site for residue CLA b 605
source : AP4

47) chain b
residue 152
type
sequence G
description binding site for residue CLA b 605
source : AP4

48) chain b
residue 153
type
sequence F
description binding site for residue CLA b 605
source : AP4

49) chain b
residue 156
type
sequence F
description binding site for residue CLA b 605
source : AP4

50) chain b
residue 157
type
sequence H
description binding site for residue CLA b 605
source : AP4

51) chain b
residue 162
type
sequence F
description binding site for residue CLA b 605
source : AP4

52) chain b
residue 164
type
sequence P
description binding site for residue CLA b 605
source : AP4

53) chain b
residue 33
type
sequence W
description binding site for residue CLA b 606
source : AP5

54) chain b
residue 40
type
sequence Y
description binding site for residue CLA b 606
source : AP5

55) chain b
residue 58
type
sequence Q
description binding site for residue CLA b 606
source : AP5

56) chain b
residue 59
type
sequence G
description binding site for residue CLA b 606
source : AP5

57) chain b
residue 61
type
sequence F
description binding site for residue CLA b 606
source : AP5

58) chain b
residue 324
type
sequence L
description binding site for residue CLA b 606
source : AP5

59) chain b
residue 325
type
sequence F
description binding site for residue CLA b 606
source : AP5

60) chain b
residue 327
type
sequence T
description binding site for residue CLA b 606
source : AP5

61) chain b
residue 328
type
sequence G
description binding site for residue CLA b 606
source : AP5

62) chain b
residue 329
type
sequence P
description binding site for residue CLA b 606
source : AP5

63) chain b
residue 450
type
sequence W
description binding site for residue CLA b 606
source : AP5

64) chain b
residue 451
type
sequence F
description binding site for residue CLA b 606
source : AP5

65) chain b
residue 236
type
sequence T
description binding site for residue CLA b 607
source : AP6

66) chain b
residue 239
type
sequence S
description binding site for residue CLA b 607
source : AP6

67) chain b
residue 240
type
sequence S
description binding site for residue CLA b 607
source : AP6

68) chain b
residue 243
type
sequence A
description binding site for residue CLA b 607
source : AP6

69) chain b
residue 463
type
sequence F
description binding site for residue CLA b 607
source : AP6

70) chain b
residue 466
type
sequence H
description binding site for residue CLA b 607
source : AP6

71) chain b
residue 467
type
sequence I
description binding site for residue CLA b 607
source : AP6

72) chain b
residue 139
type
sequence F
description binding site for residue CLA b 608
source : AP7

73) chain b
residue 208
type
sequence V
description binding site for residue CLA b 608
source : AP7

74) chain b
residue 212
type
sequence A
description binding site for residue CLA b 608
source : AP7

75) chain b
residue 215
type
sequence F
description binding site for residue CLA b 608
source : AP7

76) chain b
residue 216
type
sequence H
description binding site for residue CLA b 608
source : AP7

77) chain b
residue 219
type
sequence V
description binding site for residue CLA b 608
source : AP7

78) chain b
residue 221
type
sequence P
description binding site for residue CLA b 608
source : AP7

79) chain b
residue 222
type
sequence P
description binding site for residue CLA b 608
source : AP7

80) chain b
residue 225
type
sequence L
description binding site for residue CLA b 608
source : AP7

81) chain b
residue 229
type
sequence L
description binding site for residue CLA b 608
source : AP7

82) chain b
residue 135
type
sequence L
description binding site for residue CLA b 609
source : AP8

83) chain b
residue 139
type
sequence F
description binding site for residue CLA b 609
source : AP8

84) chain b
residue 142
type
sequence H
description binding site for residue CLA b 609
source : AP8

85) chain b
residue 143
type
sequence L
description binding site for residue CLA b 609
source : AP8

86) chain b
residue 146
type
sequence A
description binding site for residue CLA b 609
source : AP8

87) chain b
residue 231
type
sequence M
description binding site for residue CLA b 609
source : AP8

88) chain b
residue 236
type
sequence T
description binding site for residue CLA b 609
source : AP8

89) chain b
residue 237
type
sequence V
description binding site for residue CLA b 609
source : AP8

90) chain b
residue 240
type
sequence S
description binding site for residue CLA b 609
source : AP8

91) chain b
residue 241
type
sequence S
description binding site for residue CLA b 609
source : AP8

92) chain b
residue 5
type
sequence W
description binding site for residue CLA b 610
source : AP9

93) chain b
residue 6
type
sequence Y
description binding site for residue CLA b 610
source : AP9

94) chain b
residue 7
type
sequence R
description binding site for residue CLA b 610
source : AP9

95) chain b
residue 8
type
sequence V
description binding site for residue CLA b 610
source : AP9

96) chain b
residue 9
type
sequence H
description binding site for residue CLA b 610
source : AP9

97) chain b
residue 10
type
sequence T
description binding site for residue CLA b 610
source : AP9

98) chain b
residue 461
type
sequence L
description binding site for residue CLA b 610
source : AP9

99) chain b
residue 462
type
sequence F
description binding site for residue CLA b 610
source : AP9

100) chain b
residue 465
type
sequence G
description binding site for residue CLA b 610
source : AP9

101) chain b
residue 468
type
sequence W
description binding site for residue CLA b 610
source : AP9

102) chain b
residue 469
type
sequence H
description binding site for residue CLA b 610
source : AP9

103) chain b
residue 472
type
sequence R
description binding site for residue CLA b 610
source : AP9

104) chain b
residue 9
type
sequence H
description binding site for residue CLA b 611
source : AQ1

105) chain b
residue 23
type
sequence H
description binding site for residue CLA b 611
source : AQ1

106) chain b
residue 26
type
sequence H
description binding site for residue CLA b 611
source : AQ1

107) chain b
residue 27
type
sequence T
description binding site for residue CLA b 611
source : AQ1

108) chain b
residue 237
type
sequence V
description binding site for residue CLA b 611
source : AQ1

109) chain b
residue 238
type
sequence L
description binding site for residue CLA b 611
source : AQ1

110) chain b
residue 241
type
sequence S
description binding site for residue CLA b 611
source : AQ1

111) chain b
residue 9
type
sequence H
description binding site for residue CLA b 612
source : AQ2

112) chain b
residue 26
type
sequence H
description binding site for residue CLA b 612
source : AQ2

113) chain b
residue 462
type
sequence F
description binding site for residue CLA b 612
source : AQ2

114) chain b
residue 8
type
sequence V
description binding site for residue CLA b 613
source : AQ3

115) chain b
residue 9
type
sequence H
description binding site for residue CLA b 613
source : AQ3

116) chain b
residue 29
type
sequence L
description binding site for residue CLA b 613
source : AQ3

117) chain b
residue 20
type
sequence I
description binding site for residue CLA b 614
source : AQ4

118) chain b
residue 23
type
sequence H
description binding site for residue CLA b 614
source : AQ4

119) chain b
residue 24
type
sequence L
description binding site for residue CLA b 614
source : AQ4

120) chain b
residue 138
type
sequence M
description binding site for residue CLA b 614
source : AQ4

121) chain b
residue 142
type
sequence H
description binding site for residue CLA b 614
source : AQ4

122) chain b
residue 145
type
sequence L
description binding site for residue CLA b 614
source : AQ4

123) chain b
residue 24
type
sequence L
description binding site for residue CLA b 615
source : AQ5

124) chain b
residue 110
type
sequence A
description binding site for residue CLA b 615
source : AQ5

125) chain b
residue 113
type
sequence W
description binding site for residue CLA b 615
source : AQ5

126) chain b
residue 114
type
sequence H
description binding site for residue CLA b 615
source : AQ5

127) chain b
residue 25
type
sequence M
description binding site for residue BCR b 616
source : AQ6

128) chain b
residue 115
type
sequence W
description binding site for residue BCR b 616
source : AQ6

129) chain b
residue 29
type
sequence L
description binding site for residue BCR b 617
source : AQ7

130) chain b
residue 32
type
sequence G
description binding site for residue BCR b 617
source : AQ7

131) chain b
residue 36
type
sequence S
description binding site for residue BCR b 617
source : AQ7

132) chain b
residue 102
type
sequence V
description binding site for residue BCR b 617
source : AQ7

133) chain b
residue 105
type
sequence G
description binding site for residue BCR b 617
source : AQ7

134) chain b
residue 109
type
sequence L
description binding site for residue BCR b 618
source : AQ8

135) chain b
residue 18
type
sequence R
description binding site for residue SQD b 619
source : AQ9

136) chain b
residue 28
type
sequence A
description binding site for residue SQD b 619
source : AQ9

137) chain b
residue 29
type
sequence L
description binding site for residue SQD b 619
source : AQ9

138) chain b
residue 115
type
sequence W
description binding site for residue SQD b 619
source : AQ9

139) chain b
residue 43
type
sequence A
description binding site for residue STE b 620
source : AR1

140) chain b
residue 44
type
sequence T
description binding site for residue STE b 620
source : AR1

141) chain b
residue 40
type
sequence Y
description binding site for residue LMG b 621
source : AR2

142) chain b
residue 327
type
sequence T
description binding site for residue LMG b 621
source : AR2

143) chain b
residue 329
type
sequence P
description binding site for residue LMG b 621
source : AR2

144) chain b
residue 332
type
sequence K
description binding site for residue LMG b 621
source : AR2

145) chain b
residue 91
type
sequence W
description binding site for residue STE b 622
source : AR3

146) chain b
residue 151
type
sequence F
description binding site for residue LMG b 623
source : AR4

147) chain b
residue 159
type
sequence T
description binding site for residue LMG b 623
source : AR4

148) chain b
residue 182
type
sequence A
description binding site for residue LMG b 623
source : AR4

149) chain b
residue 185
type
sequence W
description binding site for residue LMG b 623
source : AR4

150) chain b
residue 203
type
sequence I
description binding site for residue LMG b 623
source : AR4

151) chain b
residue 214
type
sequence L
description binding site for residue LMG b 623
source : AR4

152) chain b
residue 228
type
sequence A
description binding site for residue STE b 624
source : AR5

153) chain b
residue 211
type
sequence I
description binding site for residue STE b 626
source : AR7

154) chain b
residue 218
type
sequence L
description binding site for residue STE b 626
source : AR7

155) chain b
residue 183
type
sequence P
description binding site for residue LMG c 524
source : AU4

156) chain b
residue 184
type
sequence E
description binding site for residue LMG c 524
source : AU4

157) chain b
residue 185
type
sequence W
description binding site for residue LMG c 524
source : AU4

158) chain b
residue 6
type
sequence Y
description binding site for residue LHG d 406
source : AV2

159) chain b
residue 7
type
sequence R
description binding site for residue LHG d 406
source : AV2

160) chain b
residue 464
type
sequence F
description binding site for residue LHG d 406
source : AV2

161) chain b
residue 468
type
sequence W
description binding site for residue LHG d 406
source : AV2

162) chain b
residue 185
type
sequence W
description binding site for residue CLA h 101
source : AW3

163) chain b
residue 186
type
sequence G
description binding site for residue CLA h 101
source : AW3

164) chain b
residue 190
type
sequence F
description binding site for residue CLA h 101
source : AW3

165) chain b
residue 193
type
sequence Y
description binding site for residue DGD h 102
source : AW4

166) chain b
residue 254
type
sequence G
description binding site for residue DGD h 102
source : AW4

167) chain b
residue 258
type
sequence Y
description binding site for residue DGD h 102
source : AW4

168) chain b
residue 274
type
sequence Q
description binding site for residue DGD h 102
source : AW4

169) chain b
residue 277
type
sequence S
description binding site for residue DGD h 102
source : AW4

170) chain b
residue 228
type
sequence A
description binding site for residue STE h 103
source : AW5

171) chain b
residue 4
type
sequence P
description binding site for residue LHG l 101
source : AW7

172) chain b
residue 5
type
sequence W
description binding site for residue LHG l 101
source : AW7

173) chain b
residue 6
type
sequence Y
description binding site for residue LHG l 101
source : AW7


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