eF-site ID 6w1u-a PDB Code 6w1u Chain a click to enlarge Title RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.09 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence a:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain a residue 102 type sequence L description binding site for residue LMG B 629 source : AH1 2) chain a residue 103 type sequence D description binding site for residue LMG B 629 source : AH1 3) chain a residue 215 type sequence H description binding site for residue FE2 a 401 source : AN1 4) chain a residue 272 type sequence H description binding site for residue FE2 a 401 source : AN1 5) chain a residue 147 type sequence Y description binding site for residue CLA a 402 source : AN2 6) chain a residue 150 type sequence P description binding site for residue CLA a 402 source : AN2 7) chain a residue 153 type sequence S description binding site for residue CLA a 402 source : AN2 8) chain a residue 157 type sequence V description binding site for residue CLA a 402 source : AN2 9) chain a residue 183 type sequence M description binding site for residue CLA a 402 source : AN2 10) chain a residue 186 type sequence F description binding site for residue CLA a 402 source : AN2 11) chain a residue 187 type sequence Q description binding site for residue CLA a 402 source : AN2 12) chain a residue 192 type sequence I description binding site for residue CLA a 402 source : AN2 13) chain a residue 198 type sequence H description binding site for residue CLA a 402 source : AN2 14) chain a residue 201 type sequence G description binding site for residue CLA a 402 source : AN2 15) chain a residue 206 type sequence F description binding site for residue CLA a 402 source : AN2 16) chain a residue 286 type sequence T description binding site for residue CLA a 402 source : AN2 17) chain a residue 290 type sequence I description binding site for residue CLA a 402 source : AN2 18) chain a residue 199 type sequence Q description binding site for residue CLA a 403 source : AN3 19) chain a residue 202 type sequence V description binding site for residue CLA a 403 source : AN3 20) chain a residue 203 type sequence A description binding site for residue CLA a 403 source : AN3 21) chain a residue 206 type sequence F description binding site for residue CLA a 403 source : AN3 22) chain a residue 207 type sequence G description binding site for residue CLA a 403 source : AN3 23) chain a residue 210 type sequence L description binding site for residue CLA a 403 source : AN3 24) chain a residue 278 type sequence W description binding site for residue CLA a 403 source : AN3 25) chain a residue 41 type sequence L description binding site for residue PHO a 404 source : AN4 26) chain a residue 44 type sequence A description binding site for residue PHO a 404 source : AN4 27) chain a residue 45 type sequence T description binding site for residue PHO a 404 source : AN4 28) chain a residue 48 type sequence F description binding site for residue PHO a 404 source : AN4 29) chain a residue 126 type sequence Y description binding site for residue PHO a 404 source : AN4 30) chain a residue 130 type sequence Q description binding site for residue PHO a 404 source : AN4 31) chain a residue 147 type sequence Y description binding site for residue PHO a 404 source : AN4 32) chain a residue 279 type sequence P description binding site for residue PHO a 404 source : AN4 33) chain a residue 40 type sequence T description binding site for residue CLA a 405 source : AN5 34) chain a residue 93 type sequence F description binding site for residue CLA a 405 source : AN5 35) chain a residue 95 type sequence P description binding site for residue CLA a 405 source : AN5 36) chain a residue 96 type sequence I description binding site for residue CLA a 405 source : AN5 37) chain a residue 97 type sequence W description binding site for residue CLA a 405 source : AN5 38) chain a residue 114 type sequence L description binding site for residue CLA a 405 source : AN5 39) chain a residue 118 type sequence H description binding site for residue CLA a 405 source : AN5 40) chain a residue 43 type sequence A description binding site for residue BCR a 406 source : AN6 41) chain a residue 50 type sequence I description binding site for residue BCR a 406 source : AN6 42) chain a residue 96 type sequence I description binding site for residue BCR a 406 source : AN6 43) chain a residue 181 type sequence N description binding site for residue CL a 407 source : AN7 44) chain a residue 332 type sequence H description binding site for residue CL a 407 source : AN7 45) chain a residue 333 type sequence E description binding site for residue CL a 407 source : AN7 46) chain a residue 337 type sequence H description binding site for residue CL a 408 source : AN8 47) chain a residue 338 type sequence N description binding site for residue CL a 408 source : AN8 48) chain a residue 215 type sequence H description binding site for residue BCT a 409 source : AN9 49) chain a residue 244 type sequence E description binding site for residue BCT a 409 source : AN9 50) chain a residue 246 type sequence Y description binding site for residue BCT a 409 source : AN9 51) chain a residue 272 type sequence H description binding site for residue BCT a 409 source : AN9 52) chain a residue 211 type sequence F description binding site for residue PL9 a 410 source : AO1 53) chain a residue 214 type sequence M description binding site for residue PL9 a 410 source : AO1 54) chain a residue 215 type sequence H description binding site for residue PL9 a 410 source : AO1 55) chain a residue 218 type sequence L description binding site for residue PL9 a 410 source : AO1 56) chain a residue 255 type sequence F description binding site for residue PL9 a 410 source : AO1 57) chain a residue 263 type sequence A description binding site for residue PL9 a 410 source : AO1 58) chain a residue 264 type sequence S description binding site for residue PL9 a 410 source : AO1 59) chain a residue 265 type sequence F description binding site for residue PL9 a 410 source : AO1 60) chain a residue 271 type sequence L description binding site for residue PL9 a 410 source : AO1 61) chain a residue 172 type sequence M description binding site for residue CLA a 411 source : AO2 62) chain a residue 176 type sequence I description binding site for residue CLA a 411 source : AO2 63) chain a residue 179 type sequence T description binding site for residue CLA a 411 source : AO2 64) chain a residue 180 type sequence F description binding site for residue CLA a 411 source : AO2 65) chain a residue 183 type sequence M description binding site for residue CLA a 411 source : AO2 66) chain a residue 200 type sequence L description binding site for residue SQD a 412 source : AO3 67) chain a residue 267 type sequence N description binding site for residue SQD a 412 source : AO3 68) chain a residue 270 type sequence S description binding site for residue SQD a 412 source : AO3 69) chain a residue 277 type sequence A description binding site for residue SQD a 412 source : AO3 70) chain a residue 278 type sequence W description binding site for residue SQD a 412 source : AO3 71) chain a residue 281 type sequence V description binding site for residue SQD a 412 source : AO3 72) chain a residue 282 type sequence G description binding site for residue SQD a 412 source : AO3 73) chain a residue 28 type sequence L description binding site for residue SQD a 413 source : AO4 74) chain a residue 30 type sequence V description binding site for residue SQD a 413 source : AO4 75) chain a residue 42 type sequence L description binding site for residue SQD a 413 source : AO4 76) chain a residue 53 type sequence I description binding site for residue STE a 414 source : AO5 77) chain a residue 16 type sequence R description binding site for residue STE a 415 source : AO6 78) chain a residue 61 type sequence D description binding site for residue OEX a 416 source : AO7 79) chain a residue 170 type sequence D description binding site for residue OEX a 416 source : AO7 80) chain a residue 189 type sequence E description binding site for residue OEX a 416 source : AO7 81) chain a residue 332 type sequence H description binding site for residue OEX a 416 source : AO7 82) chain a residue 333 type sequence E description binding site for residue OEX a 416 source : AO7 83) chain a residue 337 type sequence H description binding site for residue OEX a 416 source : AO7 84) chain a residue 342 type sequence D description binding site for residue OEX a 416 source : AO7 85) chain a residue 344 type sequence A description binding site for residue OEX a 416 source : AO7 86) chain a residue 61 type sequence D description binding site for residue OEY a 417 source : AO8 87) chain a residue 170 type sequence D description binding site for residue OEY a 417 source : AO8 88) chain a residue 185 type sequence V description binding site for residue OEY a 417 source : AO8 89) chain a residue 189 type sequence E description binding site for residue OEY a 417 source : AO8 90) chain a residue 332 type sequence H description binding site for residue OEY a 417 source : AO8 91) chain a residue 333 type sequence E description binding site for residue OEY a 417 source : AO8 92) chain a residue 337 type sequence H description binding site for residue OEY a 417 source : AO8 93) chain a residue 342 type sequence D description binding site for residue OEY a 417 source : AO8 94) chain a residue 344 type sequence A description binding site for residue OEY a 417 source : AO8 95) chain a residue 127 type sequence M description binding site for residue CLA c 507 source : AS5 96) chain a residue 131 type sequence W description binding site for residue CLA c 507 source : AS5 97) chain a residue 91 type sequence L description binding site for residue DGD c 519 source : AT8 98) chain a residue 155 type sequence F description binding site for residue DGD c 519 source : AT8 99) chain a residue 163 type sequence I description binding site for residue DGD c 519 source : AT8 100) chain a residue 195 type sequence H description binding site for residue DGD c 520 source : AT9 101) chain a residue 197 type sequence F description binding site for residue DGD c 520 source : AT9 102) chain a residue 300 type sequence F description binding site for residue DGD c 521 source : AU1 103) chain a residue 301 type sequence N description binding site for residue DGD c 521 source : AU1 104) chain a residue 305 type sequence S description binding site for residue DGD c 521 source : AU1 105) chain a residue 97 type sequence W description binding site for residue LMG c 525 source : AU5 106) chain a residue 98 type sequence E description binding site for residue LMG c 525 source : AU5 107) chain a residue 124 type sequence S description binding site for residue LMG c 525 source : AU5 108) chain a residue 155 type sequence F description binding site for residue LMG c 525 source : AU5 109) chain a residue 210 type sequence L description binding site for residue PHO d 401 source : AU6 110) chain a residue 214 type sequence M description binding site for residue PHO d 401 source : AU6 111) chain a residue 206 type sequence F description binding site for residue CLA d 402 source : AU7 112) chain a residue 77 type sequence I description binding site for residue PL9 d 405 source : AV1 113) chain a residue 234 type sequence N description binding site for residue LHG d 406 source : AV2 114) chain a residue 140 type sequence R description binding site for residue LHG d 408 source : AV4 115) chain a residue 142 type sequence W description binding site for residue LHG d 408 source : AV4 116) chain a residue 273 type sequence F description binding site for residue LHG d 408 source : AV4 117) chain a residue 262 type sequence Y description binding site for residue LHG e 102 source : AW1 118) chain a residue 232 type sequence S description binding site for residue LHG l 101 source : AW7 119) chain a residue 234 type sequence N description binding site for residue LHG l 101 source : AW7 120) chain a residue 96 type sequence I description binding site for Di-peptide FME i 1 and GLU i 2 source : AX3 121) chain a residue 97 type sequence W description binding site for Di-peptide FME i 1 and GLU i 2 source : AX3 122) chain a residue 99 type sequence A description binding site for Di-peptide FME i 1 and GLU i 2 source : AX3 123) chain a residue 74 type sequence G description binding site for Di-peptide FME m 1 and GLU m 2 source : AX4 124) chain a residue 170 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 125) chain a residue 189 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 126) chain a residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 127) chain a residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 128) chain a residue 126 type MOD_RES sequence Y description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 129) chain a residue 215 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 130) chain a residue 272 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 131) chain a residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14 132) chain a residue 118 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 133) chain a residue 198 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 134) chain a residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 135) chain a residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13 136) chain a residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12

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