eF-site ID 6w1r-c
PDB Code 6w1r
Chain c

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Title RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom resolution
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence c:  ATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVF
WAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPG
GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEE
YSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFF
GGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEG
WIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARR
AFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFY
GPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLM
RSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKN
DIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSP
RSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRE
SEPVLSMPSLD
Description


Functional site

1) chain c
residue 354
type
sequence E
description binding site for residue CL a 408
source : AN8

2) chain c
residue 28
type
sequence Q
description binding site for residue SQD a 413
source : AO4

3) chain c
residue 34
type
sequence A
description binding site for residue SQD a 413
source : AO4

4) chain c
residue 36
type
sequence W
description binding site for residue SQD a 413
source : AO4

5) chain c
residue 354
type
sequence E
description binding site for residue OEX a 418
source : AO9

6) chain c
residue 357
type
sequence R
description binding site for residue OEX a 418
source : AO9

7) chain c
residue 354
type
sequence E
description binding site for residue OEY a 419
source : AP1

8) chain c
residue 357
type
sequence R
description binding site for residue OEY a 419
source : AP1

9) chain c
residue 204
type
sequence L
description binding site for residue LMG b 621
source : AR4

10) chain c
residue 206
type
sequence P
description binding site for residue LMG b 621
source : AR4

11) chain c
residue 35
type
sequence W
description binding site for residue STE c 501
source : AR8

12) chain c
residue 95
type
sequence L
description binding site for residue CLA c 502
source : AR9

13) chain c
residue 168
type
sequence L
description binding site for residue CLA c 502
source : AR9

14) chain c
residue 171
type
sequence G
description binding site for residue CLA c 502
source : AR9

15) chain c
residue 172
type
sequence A
description binding site for residue CLA c 502
source : AR9

16) chain c
residue 175
type
sequence L
description binding site for residue CLA c 502
source : AR9

17) chain c
residue 237
type
sequence H
description binding site for residue CLA c 502
source : AR9

18) chain c
residue 240
type
sequence I
description binding site for residue CLA c 502
source : AR9

19) chain c
residue 278
type
sequence A
description binding site for residue CLA c 502
source : AR9

20) chain c
residue 282
type
sequence M
description binding site for residue CLA c 502
source : AR9

21) chain c
residue 289
type
sequence F
description binding site for residue CLA c 502
source : AR9

22) chain c
residue 297
type
sequence Y
description binding site for residue CLA c 502
source : AR9

23) chain c
residue 63
type
sequence W
description binding site for residue CLA c 503
source : AS1

24) chain c
residue 87
type
sequence I
description binding site for residue CLA c 503
source : AS1

25) chain c
residue 91
type
sequence H
description binding site for residue CLA c 503
source : AS1

26) chain c
residue 174
type
sequence L
description binding site for residue CLA c 503
source : AS1

27) chain c
residue 279
type
sequence L
description binding site for residue CLA c 503
source : AS1

28) chain c
residue 282
type
sequence M
description binding site for residue CLA c 503
source : AS1

29) chain c
residue 286
type
sequence A
description binding site for residue CLA c 503
source : AS1

30) chain c
residue 290
type
sequence V
description binding site for residue CLA c 503
source : AS1

31) chain c
residue 297
type
sequence Y
description binding site for residue CLA c 503
source : AS1

32) chain c
residue 430
type
sequence H
description binding site for residue CLA c 503
source : AS1

33) chain c
residue 433
type
sequence L
description binding site for residue CLA c 503
source : AS1

34) chain c
residue 437
type
sequence F
description binding site for residue CLA c 503
source : AS1

35) chain c
residue 60
type
sequence I
description binding site for residue CLA c 504
source : AS2

36) chain c
residue 61
type
sequence V
description binding site for residue CLA c 504
source : AS2

37) chain c
residue 64
type
sequence A
description binding site for residue CLA c 504
source : AS2

38) chain c
residue 68
type
sequence T
description binding site for residue CLA c 504
source : AS2

39) chain c
residue 88
type
sequence L
description binding site for residue CLA c 504
source : AS2

40) chain c
residue 91
type
sequence H
description binding site for residue CLA c 504
source : AS2

41) chain c
residue 118
type
sequence H
description binding site for residue CLA c 504
source : AS2

42) chain c
residue 63
type
sequence W
description binding site for residue CLA c 505
source : AS3

43) chain c
residue 67
type
sequence M
description binding site for residue CLA c 505
source : AS3

44) chain c
residue 70
type
sequence F
description binding site for residue CLA c 505
source : AS3

45) chain c
residue 84
type
sequence Q
description binding site for residue CLA c 505
source : AS3

46) chain c
residue 85
type
sequence G
description binding site for residue CLA c 505
source : AS3

47) chain c
residue 425
type
sequence W
description binding site for residue CLA c 505
source : AS3

48) chain c
residue 429
type
sequence S
description binding site for residue CLA c 505
source : AS3

49) chain c
residue 430
type
sequence H
description binding site for residue CLA c 505
source : AS3

50) chain c
residue 264
type
sequence F
description binding site for residue CLA c 506
source : AS4

51) chain c
residue 274
type
sequence Y
description binding site for residue CLA c 506
source : AS4

52) chain c
residue 277
type
sequence G
description binding site for residue CLA c 506
source : AS4

53) chain c
residue 441
type
sequence H
description binding site for residue CLA c 506
source : AS4

54) chain c
residue 442
type
sequence L
description binding site for residue CLA c 506
source : AS4

55) chain c
residue 445
type
sequence A
description binding site for residue CLA c 506
source : AS4

56) chain c
residue 449
type
sequence R
description binding site for residue CLA c 506
source : AS4

57) chain c
residue 214
type
sequence L
description binding site for residue CLA c 507
source : AS5

58) chain c
residue 243
type
sequence I
description binding site for residue CLA c 507
source : AS5

59) chain c
residue 247
type
sequence G
description binding site for residue CLA c 507
source : AS5

60) chain c
residue 250
type
sequence W
description binding site for residue CLA c 507
source : AS5

61) chain c
residue 251
type
sequence H
description binding site for residue CLA c 507
source : AS5

62) chain c
residue 254
type
sequence T
description binding site for residue CLA c 507
source : AS5

63) chain c
residue 255
type
sequence T
description binding site for residue CLA c 507
source : AS5

64) chain c
residue 256
type
sequence P
description binding site for residue CLA c 507
source : AS5

65) chain c
residue 257
type
sequence F
description binding site for residue CLA c 507
source : AS5

66) chain c
residue 259
type
sequence W
description binding site for residue CLA c 507
source : AS5

67) chain c
residue 264
type
sequence F
description binding site for residue CLA c 507
source : AS5

68) chain c
residue 157
type
sequence M
description binding site for residue CLA c 508
source : AS6

69) chain c
residue 158
type
sequence T
description binding site for residue CLA c 508
source : AS6

70) chain c
residue 161
type
sequence L
description binding site for residue CLA c 508
source : AS6

71) chain c
residue 164
type
sequence H
description binding site for residue CLA c 508
source : AS6

72) chain c
residue 168
type
sequence L
description binding site for residue CLA c 508
source : AS6

73) chain c
residue 271
type
sequence Y
description binding site for residue CLA c 508
source : AS6

74) chain c
residue 274
type
sequence Y
description binding site for residue CLA c 508
source : AS6

75) chain c
residue 275
type
sequence S
description binding site for residue CLA c 508
source : AS6

76) chain c
residue 282
type
sequence M
description binding site for residue CLA c 508
source : AS6

77) chain c
residue 33
type
sequence F
description binding site for residue CLA c 509
source : AS7

78) chain c
residue 36
type
sequence W
description binding site for residue CLA c 509
source : AS7

79) chain c
residue 37
type
sequence A
description binding site for residue CLA c 509
source : AS7

80) chain c
residue 38
type
sequence G
description binding site for residue CLA c 509
source : AS7

81) chain c
residue 39
type
sequence N
description binding site for residue CLA c 509
source : AS7

82) chain c
residue 40
type
sequence A
description binding site for residue CLA c 509
source : AS7

83) chain c
residue 276
type
sequence L
description binding site for residue CLA c 509
source : AS7

84) chain c
residue 436
type
sequence F
description binding site for residue CLA c 509
source : AS7

85) chain c
residue 440
type
sequence G
description binding site for residue CLA c 509
source : AS7

86) chain c
residue 443
type
sequence W
description binding site for residue CLA c 509
source : AS7

87) chain c
residue 444
type
sequence H
description binding site for residue CLA c 509
source : AS7

88) chain c
residue 447
type
sequence R
description binding site for residue CLA c 509
source : AS7

89) chain c
residue 39
type
sequence N
description binding site for residue CLA c 510
source : AS8

90) chain c
residue 42
type
sequence L
description binding site for residue CLA c 510
source : AS8

91) chain c
residue 49
type
sequence L
description binding site for residue CLA c 510
source : AS8

92) chain c
residue 52
type
sequence A
description binding site for residue CLA c 510
source : AS8

93) chain c
residue 53
type
sequence H
description binding site for residue CLA c 510
source : AS8

94) chain c
residue 56
type
sequence H
description binding site for residue CLA c 510
source : AS8

95) chain c
residue 149
type
sequence Y
description binding site for residue CLA c 510
source : AS8

96) chain c
residue 151
type
sequence W
description binding site for residue CLA c 510
source : AS8

97) chain c
residue 160
type
sequence I
description binding site for residue CLA c 510
source : AS8

98) chain c
residue 268
type
sequence G
description binding site for residue CLA c 510
source : AS8

99) chain c
residue 271
type
sequence Y
description binding site for residue CLA c 510
source : AS8

100) chain c
residue 272
type
sequence L
description binding site for residue CLA c 510
source : AS8

101) chain c
residue 275
type
sequence S
description binding site for residue CLA c 510
source : AS8

102) chain c
residue 39
type
sequence N
description binding site for residue CLA c 511
source : AS9

103) chain c
residue 56
type
sequence H
description binding site for residue CLA c 511
source : AS9

104) chain c
residue 60
type
sequence I
description binding site for residue CLA c 511
source : AS9

105) chain c
residue 436
type
sequence F
description binding site for residue CLA c 511
source : AS9

106) chain c
residue 437
type
sequence F
description binding site for residue CLA c 511
source : AS9

107) chain c
residue 24
type
sequence T
description binding site for residue CLA c 512
source : AT1

108) chain c
residue 26
type
sequence R
description binding site for residue CLA c 512
source : AT1

109) chain c
residue 35
type
sequence W
description binding site for residue CLA c 512
source : AT1

110) chain c
residue 38
type
sequence G
description binding site for residue CLA c 512
source : AT1

111) chain c
residue 39
type
sequence N
description binding site for residue CLA c 512
source : AT1

112) chain c
residue 41
type
sequence R
description binding site for residue CLA c 512
source : AT1

113) chain c
residue 42
type
sequence L
description binding site for residue CLA c 512
source : AT1

114) chain c
residue 45
type
sequence L
description binding site for residue CLA c 512
source : AT1

115) chain c
residue 48
type
sequence K
description binding site for residue CLA c 512
source : AT1

116) chain c
residue 52
type
sequence A
description binding site for residue CLA c 512
source : AT1

117) chain c
residue 127
type
sequence F
description binding site for residue CLA c 512
source : AT1

118) chain c
residue 134
type
sequence I
description binding site for residue CLA c 512
source : AT1

119) chain c
residue 53
type
sequence H
description binding site for residue CLA c 513
source : AT2

120) chain c
residue 146
type
sequence F
description binding site for residue CLA c 513
source : AT2

121) chain c
residue 147
type
sequence F
description binding site for residue CLA c 513
source : AT2

122) chain c
residue 163
type
sequence F
description binding site for residue CLA c 513
source : AT2

123) chain c
residue 164
type
sequence H
description binding site for residue CLA c 513
source : AT2

124) chain c
residue 167
type
sequence V
description binding site for residue CLA c 513
source : AT2

125) chain c
residue 171
type
sequence G
description binding site for residue CLA c 513
source : AT2

126) chain c
residue 50
type
sequence L
description binding site for residue CLA c 514
source : AT3

127) chain c
residue 124
type
sequence V
description binding site for residue CLA c 514
source : AT3

128) chain c
residue 128
type
sequence G
description binding site for residue CLA c 514
source : AT3

129) chain c
residue 131
type
sequence Y
description binding site for residue CLA c 514
source : AT3

130) chain c
residue 132
type
sequence H
description binding site for residue CLA c 514
source : AT3

131) chain c
residue 137
type
sequence P
description binding site for residue CLA c 514
source : AT3

132) chain c
residue 140
type
sequence L
description binding site for residue CLA c 514
source : AT3

133) chain c
residue 143
type
sequence Y
description binding site for residue CLA c 514
source : AT3

134) chain c
residue 147
type
sequence F
description binding site for residue CLA c 514
source : AT3

135) chain c
residue 121
type
sequence S
description binding site for residue BCR c 515
source : AT4

136) chain c
residue 124
type
sequence V
description binding site for residue BCR c 515
source : AT4

137) chain c
residue 125
type
sequence L
description binding site for residue BCR c 515
source : AT4

138) chain c
residue 209
type
sequence I
description binding site for residue BCR c 516
source : AT5

139) chain c
residue 212
type
sequence Y
description binding site for residue BCR c 516
source : AT5

140) chain c
residue 213
type
sequence L
description binding site for residue BCR c 516
source : AT5

141) chain c
residue 224
type
sequence I
description binding site for residue BCR c 516
source : AT5

142) chain c
residue 227
type
sequence V
description binding site for residue BCR c 516
source : AT5

143) chain c
residue 236
type
sequence G
description binding site for residue BCR c 516
source : AT5

144) chain c
residue 237
type
sequence H
description binding site for residue BCR c 516
source : AT5

145) chain c
residue 264
type
sequence F
description binding site for residue BCR c 516
source : AT5

146) chain c
residue 217
type
sequence P
description binding site for residue DGD c 517
source : AT6

147) chain c
residue 219
type
sequence G
description binding site for residue DGD c 517
source : AT6

148) chain c
residue 220
type
sequence G
description binding site for residue DGD c 517
source : AT6

149) chain c
residue 221
type
sequence E
description binding site for residue DGD c 517
source : AT6

150) chain c
residue 222
type
sequence G
description binding site for residue DGD c 517
source : AT6

151) chain c
residue 223
type
sequence W
description binding site for residue DGD c 517
source : AT6

152) chain c
residue 288
type
sequence C
description binding site for residue DGD c 517
source : AT6

153) chain c
residue 292
type
sequence F
description binding site for residue DGD c 517
source : AT6

154) chain c
residue 293
type
sequence N
description binding site for residue DGD c 517
source : AT6

155) chain c
residue 294
type
sequence N
description binding site for residue DGD c 517
source : AT6

156) chain c
residue 295
type
sequence T
description binding site for residue DGD c 517
source : AT6

157) chain c
residue 360
type
sequence D
description binding site for residue DGD c 517
source : AT6

158) chain c
residue 361
type
sequence F
description binding site for residue DGD c 517
source : AT6

159) chain c
residue 362
type
sequence R
description binding site for residue DGD c 517
source : AT6

160) chain c
residue 83
type
sequence E
description binding site for residue DGD c 518
source : AT7

161) chain c
residue 84
type
sequence Q
description binding site for residue DGD c 518
source : AT7

162) chain c
residue 85
type
sequence G
description binding site for residue DGD c 518
source : AT7

163) chain c
residue 404
type
sequence L
description binding site for residue DGD c 518
source : AT7

164) chain c
residue 406
type
sequence S
description binding site for residue DGD c 518
source : AT7

165) chain c
residue 418
type
sequence N
description binding site for residue DGD c 518
source : AT7

166) chain c
residue 419
type
sequence F
description binding site for residue DGD c 518
source : AT7

167) chain c
residue 420
type
sequence V
description binding site for residue DGD c 518
source : AT7

168) chain c
residue 425
type
sequence W
description binding site for residue DGD c 518
source : AT7

169) chain c
residue 428
type
sequence T
description binding site for residue DGD c 518
source : AT7

170) chain c
residue 405
type
sequence N
description binding site for residue DGD c 519
source : AT8

171) chain c
residue 407
type
sequence V
description binding site for residue DGD c 519
source : AT8

172) chain c
residue 415
type
sequence N
description binding site for residue DGD c 519
source : AT8

173) chain c
residue 416
type
sequence S
description binding site for residue DGD c 519
source : AT8

174) chain c
residue 418
type
sequence N
description binding site for residue DGD c 519
source : AT8

175) chain c
residue 74
type
sequence H
description binding site for residue LMG c 520
source : AT9

176) chain c
residue 433
type
sequence L
description binding site for residue LMG c 520
source : AT9

177) chain c
residue 97
type
sequence W
description binding site for residue STE c 521
source : AU1

178) chain c
residue 107
type
sequence D
description binding site for residue STE c 521
source : AU1

179) chain c
residue 113
type
sequence V
description binding site for residue STE c 521
source : AU1

180) chain c
residue 117
type
sequence V
description binding site for residue STE c 521
source : AU1

181) chain c
residue 121
type
sequence S
description binding site for residue STE c 521
source : AU1

182) chain c
residue 204
type
sequence L
description binding site for residue LMG c 522
source : AU2

183) chain c
residue 245
type
sequence I
description binding site for residue LMG c 522
source : AU2

184) chain c
residue 214
type
sequence L
description binding site for residue LMG c 523
source : AU3

185) chain c
residue 215
type
sequence K
description binding site for residue LMG c 523
source : AU3

186) chain c
residue 216
type
sequence S
description binding site for residue LMG c 523
source : AU3

187) chain c
residue 217
type
sequence P
description binding site for residue LMG c 523
source : AU3

188) chain c
residue 221
type
sequence E
description binding site for residue LMG c 523
source : AU3

189) chain c
residue 223
type
sequence W
description binding site for residue LMG c 523
source : AU3

190) chain c
residue 36
type
sequence W
description binding site for residue LHG d 407
source : AV1

191) chain c
residue 443
type
sequence W
description binding site for residue LHG d 407
source : AV1

192) chain c
residue 447
type
sequence R
description binding site for residue LHG d 407
source : AV1

193) chain c
residue 62
type
sequence F
description binding site for residue BCR k 101
source : AW4

194) chain c
residue 55
type
sequence A
description binding site for residue BCR k 102
source : AW5

195) chain c
residue 122
type
sequence S
description binding site for residue BCR k 102
source : AW5

196) chain c
residue 126
type
sequence G
description binding site for residue BCR k 102
source : AW5

197) chain c
residue 266-280
type TOPO_DOM
sequence WSGEAYLSYSLGALS
description Lumenal
source Swiss-Prot : SWS_FT_FI1

198) chain c
residue 462-473
type TOPO_DOM
sequence ESEPVLSMPSLD
description Lumenal
source Swiss-Prot : SWS_FT_FI1

199) chain c
residue 281-301
type TRANSMEM
sequence MMGFIATCFVWFNNTVYPSEF
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

200) chain c
residue 437-461
type TRANSMEM
sequence FLVGHLWHAGRARAAAAGFEKGIDR
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2


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