eF-site ID 6w1q-b
PDB Code 6w1q
Chain b

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Title RT XFEL structure of Photosystem II 50 microseconds after the second illumination at 2.27 Angstrom resolution
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence b:  GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYE
LATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSIT
GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLE
LFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL
FGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAH
HIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSS
IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQ
QEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAK
GGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPA
FFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF
YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDG
IFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSG
IDPELSPEQVEWGFYQKVGDVTTRR
Description


Functional site

1) chain b
residue 75
type
sequence W
description binding site for residue DGD A 413
source : AD4

2) chain b
residue 76
type
sequence S
description binding site for residue DGD A 413
source : AD4

3) chain b
residue 87
type
sequence D
description binding site for residue DGD A 413
source : AD4

4) chain b
residue 18
type
sequence R
description binding site for residue SQD L 101
source : AL3

5) chain b
residue 28
type
sequence A
description binding site for residue SQD L 101
source : AL3

6) chain b
residue 104
type
sequence S
description binding site for residue SQD L 101
source : AL3

7) chain b
residue 115
type
sequence W
description binding site for residue SQD L 101
source : AL3

8) chain b
residue 185
type
sequence W
description binding site for residue CLA b 601
source : AO4

9) chain b
residue 186
type
sequence G
description binding site for residue CLA b 601
source : AO4

10) chain b
residue 190
type
sequence F
description binding site for residue CLA b 601
source : AO4

11) chain b
residue 185
type
sequence W
description binding site for residue CLA b 602
source : AO5

12) chain b
residue 189
type
sequence G
description binding site for residue CLA b 602
source : AO5

13) chain b
residue 190
type
sequence F
description binding site for residue CLA b 602
source : AO5

14) chain b
residue 197
type
sequence G
description binding site for residue CLA b 602
source : AO5

15) chain b
residue 201
type
sequence H
description binding site for residue CLA b 602
source : AO5

16) chain b
residue 204
type
sequence A
description binding site for residue CLA b 602
source : AO5

17) chain b
residue 247
type
sequence F
description binding site for residue CLA b 602
source : AO5

18) chain b
residue 251
type
sequence V
description binding site for residue CLA b 602
source : AO5

19) chain b
residue 68
type
sequence R
description binding site for residue CLA b 603
source : AO6

20) chain b
residue 69
type
sequence L
description binding site for residue CLA b 603
source : AO6

21) chain b
residue 146
type
sequence A
description binding site for residue CLA b 603
source : AO6

22) chain b
residue 150
type
sequence C
description binding site for residue CLA b 603
source : AO6

23) chain b
residue 153
type
sequence F
description binding site for residue CLA b 603
source : AO6

24) chain b
residue 166
type
sequence M
description binding site for residue CLA b 603
source : AO6

25) chain b
residue 201
type
sequence H
description binding site for residue CLA b 603
source : AO6

26) chain b
residue 202
type
sequence H
description binding site for residue CLA b 603
source : AO6

27) chain b
residue 252
type
sequence V
description binding site for residue CLA b 603
source : AO6

28) chain b
residue 262
type
sequence T
description binding site for residue CLA b 603
source : AO6

29) chain b
residue 33
type
sequence W
description binding site for residue CLA b 604
source : AO7

30) chain b
residue 65
type
sequence F
description binding site for residue CLA b 604
source : AO7

31) chain b
residue 68
type
sequence R
description binding site for residue CLA b 604
source : AO7

32) chain b
residue 145
type
sequence L
description binding site for residue CLA b 604
source : AO7

33) chain b
residue 245
type
sequence V
description binding site for residue CLA b 604
source : AO7

34) chain b
residue 248
type
sequence A
description binding site for residue CLA b 604
source : AO7

35) chain b
residue 249
type
sequence A
description binding site for residue CLA b 604
source : AO7

36) chain b
residue 252
type
sequence V
description binding site for residue CLA b 604
source : AO7

37) chain b
residue 451
type
sequence F
description binding site for residue CLA b 604
source : AO7

38) chain b
residue 455
type
sequence H
description binding site for residue CLA b 604
source : AO7

39) chain b
residue 458
type
sequence F
description binding site for residue CLA b 604
source : AO7

40) chain b
residue 27
type
sequence T
description binding site for residue CLA b 605
source : AO8

41) chain b
residue 30
type
sequence V
description binding site for residue CLA b 605
source : AO8

42) chain b
residue 31
type
sequence A
description binding site for residue CLA b 605
source : AO8

43) chain b
residue 34
type
sequence A
description binding site for residue CLA b 605
source : AO8

44) chain b
residue 62
type
sequence V
description binding site for residue CLA b 605
source : AO8

45) chain b
residue 65
type
sequence F
description binding site for residue CLA b 605
source : AO8

46) chain b
residue 66
type
sequence M
description binding site for residue CLA b 605
source : AO8

47) chain b
residue 68
type
sequence R
description binding site for residue CLA b 605
source : AO8

48) chain b
residue 100
type
sequence H
description binding site for residue CLA b 605
source : AO8

49) chain b
residue 103
type
sequence L
description binding site for residue CLA b 605
source : AO8

50) chain b
residue 143
type
sequence L
description binding site for residue CLA b 605
source : AO8

51) chain b
residue 205
type
sequence A
description binding site for residue CLA b 605
source : AO8

52) chain b
residue 209
type
sequence G
description binding site for residue CLA b 605
source : AO8

53) chain b
residue 69
type
sequence L
description binding site for residue CLA b 606
source : AO9

54) chain b
residue 70
type
sequence G
description binding site for residue CLA b 606
source : AO9

55) chain b
residue 90
type
sequence F
description binding site for residue CLA b 606
source : AO9

56) chain b
residue 91
type
sequence W
description binding site for residue CLA b 606
source : AO9

57) chain b
residue 96
type
sequence V
description binding site for residue CLA b 606
source : AO9

58) chain b
residue 99
type
sequence A
description binding site for residue CLA b 606
source : AO9

59) chain b
residue 103
type
sequence L
description binding site for residue CLA b 606
source : AO9

60) chain b
residue 106
type
sequence L
description binding site for residue CLA b 606
source : AO9

61) chain b
residue 149
type
sequence L
description binding site for residue CLA b 606
source : AO9

62) chain b
residue 152
type
sequence G
description binding site for residue CLA b 606
source : AO9

63) chain b
residue 153
type
sequence F
description binding site for residue CLA b 606
source : AO9

64) chain b
residue 156
type
sequence F
description binding site for residue CLA b 606
source : AO9

65) chain b
residue 157
type
sequence H
description binding site for residue CLA b 606
source : AO9

66) chain b
residue 162
type
sequence F
description binding site for residue CLA b 606
source : AO9

67) chain b
residue 163
type
sequence G
description binding site for residue CLA b 606
source : AO9

68) chain b
residue 164
type
sequence P
description binding site for residue CLA b 606
source : AO9

69) chain b
residue 33
type
sequence W
description binding site for residue CLA b 607
source : AP1

70) chain b
residue 37
type
sequence M
description binding site for residue CLA b 607
source : AP1

71) chain b
residue 40
type
sequence Y
description binding site for residue CLA b 607
source : AP1

72) chain b
residue 59
type
sequence G
description binding site for residue CLA b 607
source : AP1

73) chain b
residue 61
type
sequence F
description binding site for residue CLA b 607
source : AP1

74) chain b
residue 324
type
sequence L
description binding site for residue CLA b 607
source : AP1

75) chain b
residue 327
type
sequence T
description binding site for residue CLA b 607
source : AP1

76) chain b
residue 328
type
sequence G
description binding site for residue CLA b 607
source : AP1

77) chain b
residue 329
type
sequence P
description binding site for residue CLA b 607
source : AP1

78) chain b
residue 450
type
sequence W
description binding site for residue CLA b 607
source : AP1

79) chain b
residue 451
type
sequence F
description binding site for residue CLA b 607
source : AP1

80) chain b
residue 236
type
sequence T
description binding site for residue CLA b 608
source : AP2

81) chain b
residue 239
type
sequence S
description binding site for residue CLA b 608
source : AP2

82) chain b
residue 243
type
sequence A
description binding site for residue CLA b 608
source : AP2

83) chain b
residue 246
type
sequence F
description binding site for residue CLA b 608
source : AP2

84) chain b
residue 463
type
sequence F
description binding site for residue CLA b 608
source : AP2

85) chain b
residue 466
type
sequence H
description binding site for residue CLA b 608
source : AP2

86) chain b
residue 467
type
sequence I
description binding site for residue CLA b 608
source : AP2

87) chain b
residue 139
type
sequence F
description binding site for residue CLA b 609
source : AP3

88) chain b
residue 208
type
sequence V
description binding site for residue CLA b 609
source : AP3

89) chain b
residue 212
type
sequence A
description binding site for residue CLA b 609
source : AP3

90) chain b
residue 215
type
sequence F
description binding site for residue CLA b 609
source : AP3

91) chain b
residue 216
type
sequence H
description binding site for residue CLA b 609
source : AP3

92) chain b
residue 221
type
sequence P
description binding site for residue CLA b 609
source : AP3

93) chain b
residue 222
type
sequence P
description binding site for residue CLA b 609
source : AP3

94) chain b
residue 229
type
sequence L
description binding site for residue CLA b 609
source : AP3

95) chain b
residue 139
type
sequence F
description binding site for residue CLA b 610
source : AP4

96) chain b
residue 142
type
sequence H
description binding site for residue CLA b 610
source : AP4

97) chain b
residue 143
type
sequence L
description binding site for residue CLA b 610
source : AP4

98) chain b
residue 145
type
sequence L
description binding site for residue CLA b 610
source : AP4

99) chain b
residue 146
type
sequence A
description binding site for residue CLA b 610
source : AP4

100) chain b
residue 231
type
sequence M
description binding site for residue CLA b 610
source : AP4

101) chain b
residue 236
type
sequence T
description binding site for residue CLA b 610
source : AP4

102) chain b
residue 237
type
sequence V
description binding site for residue CLA b 610
source : AP4

103) chain b
residue 240
type
sequence S
description binding site for residue CLA b 610
source : AP4

104) chain b
residue 241
type
sequence S
description binding site for residue CLA b 610
source : AP4

105) chain b
residue 6
type
sequence Y
description binding site for residue CLA b 611
source : AP5

106) chain b
residue 7
type
sequence R
description binding site for residue CLA b 611
source : AP5

107) chain b
residue 8
type
sequence V
description binding site for residue CLA b 611
source : AP5

108) chain b
residue 9
type
sequence H
description binding site for residue CLA b 611
source : AP5

109) chain b
residue 10
type
sequence T
description binding site for residue CLA b 611
source : AP5

110) chain b
residue 461
type
sequence L
description binding site for residue CLA b 611
source : AP5

111) chain b
residue 465
type
sequence G
description binding site for residue CLA b 611
source : AP5

112) chain b
residue 468
type
sequence W
description binding site for residue CLA b 611
source : AP5

113) chain b
residue 469
type
sequence H
description binding site for residue CLA b 611
source : AP5

114) chain b
residue 472
type
sequence R
description binding site for residue CLA b 611
source : AP5

115) chain b
residue 9
type
sequence H
description binding site for residue CLA b 612
source : AP6

116) chain b
residue 23
type
sequence H
description binding site for residue CLA b 612
source : AP6

117) chain b
residue 26
type
sequence H
description binding site for residue CLA b 612
source : AP6

118) chain b
residue 27
type
sequence T
description binding site for residue CLA b 612
source : AP6

119) chain b
residue 234
type
sequence I
description binding site for residue CLA b 612
source : AP6

120) chain b
residue 237
type
sequence V
description binding site for residue CLA b 612
source : AP6

121) chain b
residue 238
type
sequence L
description binding site for residue CLA b 612
source : AP6

122) chain b
residue 241
type
sequence S
description binding site for residue CLA b 612
source : AP6

123) chain b
residue 245
type
sequence V
description binding site for residue CLA b 612
source : AP6

124) chain b
residue 9
type
sequence H
description binding site for residue CLA b 613
source : AP7

125) chain b
residue 26
type
sequence H
description binding site for residue CLA b 613
source : AP7

126) chain b
residue 30
type
sequence V
description binding site for residue CLA b 613
source : AP7

127) chain b
residue 8
type
sequence V
description binding site for residue CLA b 614
source : AP8

128) chain b
residue 9
type
sequence H
description binding site for residue CLA b 614
source : AP8

129) chain b
residue 11
type
sequence V
description binding site for residue CLA b 614
source : AP8

130) chain b
residue 12
type
sequence L
description binding site for residue CLA b 614
source : AP8

131) chain b
residue 29
type
sequence L
description binding site for residue CLA b 614
source : AP8

132) chain b
residue 23
type
sequence H
description binding site for residue CLA b 615
source : AP9

133) chain b
residue 27
type
sequence T
description binding site for residue CLA b 615
source : AP9

134) chain b
residue 138
type
sequence M
description binding site for residue CLA b 615
source : AP9

135) chain b
residue 142
type
sequence H
description binding site for residue CLA b 615
source : AP9

136) chain b
residue 145
type
sequence L
description binding site for residue CLA b 615
source : AP9

137) chain b
residue 24
type
sequence L
description binding site for residue CLA b 616
source : AQ1

138) chain b
residue 110
type
sequence A
description binding site for residue CLA b 616
source : AQ1

139) chain b
residue 113
type
sequence W
description binding site for residue CLA b 616
source : AQ1

140) chain b
residue 114
type
sequence H
description binding site for residue CLA b 616
source : AQ1

141) chain b
residue 115
type
sequence W
description binding site for residue BCR b 617
source : AQ2

142) chain b
residue 29
type
sequence L
description binding site for residue BCR b 618
source : AQ3

143) chain b
residue 36
type
sequence S
description binding site for residue BCR b 618
source : AQ3

144) chain b
residue 102
type
sequence V
description binding site for residue BCR b 618
source : AQ3

145) chain b
residue 105
type
sequence G
description binding site for residue BCR b 618
source : AQ3

146) chain b
residue 106
type
sequence L
description binding site for residue BCR b 619
source : AQ4

147) chain b
residue 107
type
sequence L
description binding site for residue BCR b 619
source : AQ4

148) chain b
residue 109
type
sequence L
description binding site for residue BCR b 619
source : AQ4

149) chain b
residue 117
type
sequence Y
description binding site for residue BCR b 619
source : AQ4

150) chain b
residue 90
type
sequence F
description binding site for residue STE b 621
source : AQ6

151) chain b
residue 91
type
sequence W
description binding site for residue STE b 621
source : AQ6

152) chain b
residue 159
type
sequence T
description binding site for residue LMG b 622
source : AQ7

153) chain b
residue 161
type
sequence L
description binding site for residue LMG b 622
source : AQ7

154) chain b
residue 182
type
sequence A
description binding site for residue LMG b 622
source : AQ7

155) chain b
residue 185
type
sequence W
description binding site for residue LMG b 622
source : AQ7

156) chain b
residue 6
type
sequence Y
description binding site for residue LHG b 623
source : AQ8

157) chain b
residue 7
type
sequence R
description binding site for residue LHG b 623
source : AQ8

158) chain b
residue 468
type
sequence W
description binding site for residue LHG b 623
source : AQ8

159) chain b
residue 228
type
sequence A
description binding site for residue STE b 624
source : AQ9

160) chain b
residue 40
type
sequence Y
description binding site for residue STE b 625
source : AR1

161) chain b
residue 218
type
sequence L
description binding site for residue STE b 627
source : AR3

162) chain b
residue 224
type
sequence R
description binding site for residue STE b 628
source : AR4

163) chain b
residue 228
type
sequence A
description binding site for residue STE b 628
source : AR4

164) chain b
residue 224
type
sequence R
description binding site for residue STE b 629
source : AR5

165) chain b
residue 227
type
sequence K
description binding site for residue STE b 629
source : AR5

166) chain b
residue 183
type
sequence P
description binding site for residue LMG c 520
source : AT7

167) chain b
residue 184
type
sequence E
description binding site for residue LMG c 520
source : AT7

168) chain b
residue 185
type
sequence W
description binding site for residue LMG c 520
source : AT7

169) chain b
residue 193
type
sequence Y
description binding site for residue DGD h 101
source : AV4

170) chain b
residue 254
type
sequence G
description binding site for residue DGD h 101
source : AV4

171) chain b
residue 258
type
sequence Y
description binding site for residue DGD h 101
source : AV4

172) chain b
residue 273
type
sequence Y
description binding site for residue DGD h 101
source : AV4

173) chain b
residue 274
type
sequence Q
description binding site for residue DGD h 101
source : AV4

174) chain b
residue 277
type
sequence S
description binding site for residue DGD h 101
source : AV4

175) chain b
residue 452
type
sequence T
description binding site for residue DGD h 101
source : AV4

176) chain b
residue 4
type
sequence P
description binding site for residue LHG l 101
source : AW1

177) chain b
residue 5
type
sequence W
description binding site for residue LHG l 101
source : AW1

178) chain b
residue 6
type
sequence Y
description binding site for residue LHG l 101
source : AW1

179) chain b
residue 327
type
sequence T
description binding site for residue LMG m 101
source : AW2

180) chain b
residue 329
type
sequence P
description binding site for residue LMG m 101
source : AW2

181) chain b
residue 332
type
sequence K
description binding site for residue LMG m 101
source : AW2


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