eF-site ID 6w1q-D PDB Code 6w1q Chain D click to enlarge Title RT XFEL structure of Photosystem II 50 microseconds after the second illumination at 2.27 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence D:  RGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTG TTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLL LWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFE IARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAP SFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLC AIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANR FWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLAL NLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAP QDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain D residue 214 type sequence H description binding site for residue FE2 A 401 source : AC1 2) chain D residue 268 type sequence H description binding site for residue FE2 A 401 source : AC1 3) chain D residue 205 type sequence L description binding site for residue CLA A 402 source : AC2 4) chain D residue 175 type sequence V description binding site for residue CLA A 403 source : AC3 5) chain D residue 178 type sequence I description binding site for residue CLA A 403 source : AC3 6) chain D residue 179 type sequence F description binding site for residue CLA A 403 source : AC3 7) chain D residue 182 type sequence L description binding site for residue CLA A 403 source : AC3 8) chain D residue 208 type sequence A description binding site for residue PHO A 404 source : AC4 9) chain D residue 209 type sequence L description binding site for residue PHO A 404 source : AC4 10) chain D residue 213 type sequence I description binding site for residue PHO A 404 source : AC4 11) chain D residue 253 type sequence W description binding site for residue PHO A 404 source : AC4 12) chain D residue 317 type sequence K description binding site for residue CL A 406 source : AC6 13) chain D residue 42 type sequence Y description binding site for residue PL9 A 408 source : AC8 14) chain D residue 45 type sequence L description binding site for residue PL9 A 408 source : AC8 15) chain D residue 230 type sequence S description binding site for residue SQD A 410 source : AD1 16) chain D residue 232 type sequence F description binding site for residue SQD A 410 source : AD1 17) chain D residue 233 type sequence R description binding site for residue SQD A 410 source : AD1 18) chain D residue 158 type sequence L description binding site for residue CLA B 601 source : AD5 19) chain D residue 159 type sequence I description binding site for residue CLA B 601 source : AD5 20) chain D residue 281 type sequence M description binding site for residue CLA B 606 source : AE1 21) chain D residue 89 type sequence L description binding site for residue CLA B 607 source : AE2 22) chain D residue 120 type sequence F description binding site for residue CLA B 607 source : AE2 23) chain D residue 123 type sequence I description binding site for residue CLA B 607 source : AE2 24) chain D residue 126 type sequence M description binding site for residue CLA B 607 source : AE2 25) chain D residue 150 type sequence I description binding site for residue CLA B 607 source : AE2 26) chain D residue 35 type sequence I description binding site for residue LMG B 620 source : AF6 27) chain D residue 134 type sequence R description binding site for residue LMG B 620 source : AF6 28) chain D residue 72 type sequence N description binding site for residue DGD C 518 source : AI2 29) chain D residue 41 type sequence A description binding site for residue PHO D 401 source : AI7 30) chain D residue 121 type sequence G description binding site for residue PHO D 401 source : AI7 31) chain D residue 122 type sequence L description binding site for residue PHO D 401 source : AI7 32) chain D residue 125 type sequence F description binding site for residue PHO D 401 source : AI7 33) chain D residue 129 type sequence Q description binding site for residue PHO D 401 source : AI7 34) chain D residue 142 type sequence N description binding site for residue PHO D 401 source : AI7 35) chain D residue 146 type sequence F description binding site for residue PHO D 401 source : AI7 36) chain D residue 153 type sequence F description binding site for residue PHO D 401 source : AI7 37) chain D residue 174 type sequence G description binding site for residue PHO D 401 source : AI7 38) chain D residue 214 type sequence H description binding site for residue BCT D 402 source : AI8 39) chain D residue 244 type sequence Y description binding site for residue BCT D 402 source : AI8 40) chain D residue 264 type sequence K description binding site for residue BCT D 402 source : AI8 41) chain D residue 268 type sequence H description binding site for residue BCT D 402 source : AI8 42) chain D residue 149 type sequence P description binding site for residue CLA D 403 source : AI9 43) chain D residue 152 type sequence V description binding site for residue CLA D 403 source : AI9 44) chain D residue 156 type sequence V description binding site for residue CLA D 403 source : AI9 45) chain D residue 182 type sequence L description binding site for residue CLA D 403 source : AI9 46) chain D residue 185 type sequence F description binding site for residue CLA D 403 source : AI9 47) chain D residue 191 type sequence W description binding site for residue CLA D 403 source : AI9 48) chain D residue 192 type sequence T description binding site for residue CLA D 403 source : AI9 49) chain D residue 197 type sequence H description binding site for residue CLA D 403 source : AI9 50) chain D residue 200 type sequence G description binding site for residue CLA D 403 source : AI9 51) chain D residue 201 type sequence V description binding site for residue CLA D 403 source : AI9 52) chain D residue 282 type sequence S description binding site for residue CLA D 403 source : AI9 53) chain D residue 283 type sequence A description binding site for residue CLA D 403 source : AI9 54) chain D residue 286 type sequence V description binding site for residue CLA D 403 source : AI9 55) chain D residue 198 type sequence M description binding site for residue CLA D 404 source : AJ1 56) chain D residue 201 type sequence V description binding site for residue CLA D 404 source : AJ1 57) chain D residue 202 type sequence A description binding site for residue CLA D 404 source : AJ1 58) chain D residue 205 type sequence L description binding site for residue CLA D 404 source : AJ1 59) chain D residue 40 type sequence C description binding site for residue CLA D 405 source : AJ2 60) chain D residue 43 type sequence L description binding site for residue CLA D 405 source : AJ2 61) chain D residue 89 type sequence L description binding site for residue CLA D 405 source : AJ2 62) chain D residue 90 type sequence L description binding site for residue CLA D 405 source : AJ2 63) chain D residue 91 type sequence L description binding site for residue CLA D 405 source : AJ2 64) chain D residue 92 type sequence L description binding site for residue CLA D 405 source : AJ2 65) chain D residue 93 type sequence W description binding site for residue CLA D 405 source : AJ2 66) chain D residue 112 type sequence T description binding site for residue CLA D 405 source : AJ2 67) chain D residue 113 type sequence F description binding site for residue CLA D 405 source : AJ2 68) chain D residue 116 type sequence L description binding site for residue CLA D 405 source : AJ2 69) chain D residue 117 type sequence H description binding site for residue CLA D 405 source : AJ2 70) chain D residue 42 type sequence Y description binding site for residue BCR D 406 source : AJ3 71) chain D residue 46 type sequence G description binding site for residue BCR D 406 source : AJ3 72) chain D residue 49 type sequence L description binding site for residue BCR D 406 source : AJ3 73) chain D residue 50 type sequence T description binding site for residue BCR D 406 source : AJ3 74) chain D residue 198 type sequence M description binding site for residue PL9 D 407 source : AJ4 75) chain D residue 199 type sequence M description binding site for residue PL9 D 407 source : AJ4 76) chain D residue 214 type sequence H description binding site for residue PL9 D 407 source : AJ4 77) chain D residue 217 type sequence T description binding site for residue PL9 D 407 source : AJ4 78) chain D residue 246 type sequence M description binding site for residue PL9 D 407 source : AJ4 79) chain D residue 253 type sequence W description binding site for residue PL9 D 407 source : AJ4 80) chain D residue 260 type sequence A description binding site for residue PL9 D 407 source : AJ4 81) chain D residue 261 type sequence F description binding site for residue PL9 D 407 source : AJ4 82) chain D residue 267 type sequence L description binding site for residue PL9 D 407 source : AJ4 83) chain D residue 67 type sequence Y description binding site for residue LMG D 408 source : AJ5 84) chain D residue 70 type sequence G description binding site for residue LMG D 408 source : AJ5 85) chain D residue 71 type sequence C description binding site for residue LMG D 408 source : AJ5 86) chain D residue 72 type sequence N description binding site for residue LMG D 408 source : AJ5 87) chain D residue 73 type sequence F description binding site for residue LMG D 408 source : AJ5 88) chain D residue 24 type sequence R description binding site for residue SQD D 409 source : AJ6 89) chain D residue 26 type sequence R description binding site for residue SQD D 409 source : AJ6 90) chain D residue 256 type sequence I description binding site for residue LHG D 410 source : AJ7 91) chain D residue 260 type sequence A description binding site for residue LHG D 410 source : AJ7 92) chain D residue 261 type sequence F description binding site for residue LHG D 410 source : AJ7 93) chain D residue 262 type sequence S description binding site for residue LHG D 410 source : AJ7 94) chain D residue 263 type sequence N description binding site for residue LHG D 410 source : AJ7 95) chain D residue 266 type sequence W description binding site for residue LHG D 410 source : AJ7 96) chain D residue 219 type sequence E description binding site for residue LHG D 411 source : AJ8 97) chain D residue 220 type sequence N description binding site for residue LHG D 411 source : AJ8 98) chain D residue 229 type sequence A description binding site for residue LHG D 411 source : AJ8 99) chain D residue 230 type sequence S description binding site for residue LHG D 411 source : AJ8 100) chain D residue 231 type sequence T description binding site for residue LHG D 411 source : AJ8 101) chain D residue 232 type sequence F description binding site for residue LHG D 411 source : AJ8 102) chain D residue 19 type sequence D description binding site for residue LMG D 412 source : AJ9 103) chain D residue 23 type sequence K description binding site for residue LMG D 412 source : AJ9 104) chain D residue 32 type sequence W description binding site for residue LMG D 412 source : AJ9 105) chain D residue 141 type sequence Y description binding site for residue LHG D 413 source : AK1 106) chain D residue 269 type sequence F description binding site for residue LHG D 413 source : AK1 107) chain D residue 87 type sequence H description binding site for residue DGD H 103 source : AK5 108) chain D residue 163 type sequence G description binding site for residue DGD H 103 source : AK5 109) chain D residue 291 type sequence L description binding site for residue DGD H 103 source : AK5 110) chain D residue 266 type sequence W description binding site for residue LHG L 102 source : AL4 111) chain D residue 273 type sequence F description binding site for residue LHG L 102 source : AL4 112) chain D residue 99 type sequence G description binding site for residue STE X 101 source : AM4 113) chain D residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 114) chain D residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 115) chain D residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 116) chain D residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 117) chain D residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9 118) chain D residue 190-216 type prosite sequence NWTLNPFHMMGVAGVLGGALLCAIHGA description REACTION_CENTER Photosynthetic reaction center proteins signature. NilmhPfHqlGvagvfggalfcAmHGS source prosite : PS00244 119) chain D residue 266-288 type TRANSMEM sequence WLHFFMLFVPVTGLWMSAIGVVG description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 120) chain D residue 289-352 type TOPO_DOM sequence LALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAW MAPQDQPHENFVFPEEVLPRGNAL description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI3

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