eF-site ID 6w1p-c
PDB Code 6w1p
Chain c

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Title RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence c:  ATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVF
WAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPG
GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEE
YSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFF
GGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEG
WIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARR
AFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFY
GPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLM
RSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKN
DIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSP
RSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRE
SEPVLSMPSLD
Description


Functional site

1) chain c
residue 354
type
sequence E
description binding site for residue CL a 408
source : AN6

2) chain c
residue 28
type
sequence Q
description binding site for residue SQD a 411
source : AN9

3) chain c
residue 36
type
sequence W
description binding site for residue SQD a 411
source : AN9

4) chain c
residue 354
type
sequence E
description binding site for residue OEX a 415
source : AO4

5) chain c
residue 357
type
sequence R
description binding site for residue OEX a 415
source : AO4

6) chain c
residue 181
type
sequence F
description binding site for residue CLA b 601
source : AO5

7) chain c
residue 253
type
sequence L
description binding site for residue LMG b 622
source : AQ8

8) chain c
residue 94
type
sequence T
description binding site for residue CLA c 501
source : AR4

9) chain c
residue 95
type
sequence L
description binding site for residue CLA c 501
source : AR4

10) chain c
residue 171
type
sequence G
description binding site for residue CLA c 501
source : AR4

11) chain c
residue 172
type
sequence A
description binding site for residue CLA c 501
source : AR4

12) chain c
residue 175
type
sequence L
description binding site for residue CLA c 501
source : AR4

13) chain c
residue 237
type
sequence H
description binding site for residue CLA c 501
source : AR4

14) chain c
residue 240
type
sequence I
description binding site for residue CLA c 501
source : AR4

15) chain c
residue 278
type
sequence A
description binding site for residue CLA c 501
source : AR4

16) chain c
residue 282
type
sequence M
description binding site for residue CLA c 501
source : AR4

17) chain c
residue 289
type
sequence F
description binding site for residue CLA c 501
source : AR4

18) chain c
residue 297
type
sequence Y
description binding site for residue CLA c 501
source : AR4

19) chain c
residue 63
type
sequence W
description binding site for residue CLA c 502
source : AR5

20) chain c
residue 87
type
sequence I
description binding site for residue CLA c 502
source : AR5

21) chain c
residue 91
type
sequence H
description binding site for residue CLA c 502
source : AR5

22) chain c
residue 174
type
sequence L
description binding site for residue CLA c 502
source : AR5

23) chain c
residue 177
type
sequence A
description binding site for residue CLA c 502
source : AR5

24) chain c
residue 182
type
sequence F
description binding site for residue CLA c 502
source : AR5

25) chain c
residue 279
type
sequence L
description binding site for residue CLA c 502
source : AR5

26) chain c
residue 282
type
sequence M
description binding site for residue CLA c 502
source : AR5

27) chain c
residue 286
type
sequence A
description binding site for residue CLA c 502
source : AR5

28) chain c
residue 297
type
sequence Y
description binding site for residue CLA c 502
source : AR5

29) chain c
residue 426
type
sequence L
description binding site for residue CLA c 502
source : AR5

30) chain c
residue 430
type
sequence H
description binding site for residue CLA c 502
source : AR5

31) chain c
residue 437
type
sequence F
description binding site for residue CLA c 502
source : AR5

32) chain c
residue 60
type
sequence I
description binding site for residue CLA c 503
source : AR6

33) chain c
residue 61
type
sequence V
description binding site for residue CLA c 503
source : AR6

34) chain c
residue 64
type
sequence A
description binding site for residue CLA c 503
source : AR6

35) chain c
residue 68
type
sequence T
description binding site for residue CLA c 503
source : AR6

36) chain c
residue 88
type
sequence L
description binding site for residue CLA c 503
source : AR6

37) chain c
residue 91
type
sequence H
description binding site for residue CLA c 503
source : AR6

38) chain c
residue 118
type
sequence H
description binding site for residue CLA c 503
source : AR6

39) chain c
residue 63
type
sequence W
description binding site for residue CLA c 504
source : AR7

40) chain c
residue 67
type
sequence M
description binding site for residue CLA c 504
source : AR7

41) chain c
residue 70
type
sequence F
description binding site for residue CLA c 504
source : AR7

42) chain c
residue 84
type
sequence Q
description binding site for residue CLA c 504
source : AR7

43) chain c
residue 85
type
sequence G
description binding site for residue CLA c 504
source : AR7

44) chain c
residue 425
type
sequence W
description binding site for residue CLA c 504
source : AR7

45) chain c
residue 429
type
sequence S
description binding site for residue CLA c 504
source : AR7

46) chain c
residue 430
type
sequence H
description binding site for residue CLA c 504
source : AR7

47) chain c
residue 432
type
sequence V
description binding site for residue CLA c 504
source : AR7

48) chain c
residue 264
type
sequence F
description binding site for residue CLA c 505
source : AR8

49) chain c
residue 274
type
sequence Y
description binding site for residue CLA c 505
source : AR8

50) chain c
residue 277
type
sequence G
description binding site for residue CLA c 505
source : AR8

51) chain c
residue 441
type
sequence H
description binding site for residue CLA c 505
source : AR8

52) chain c
residue 442
type
sequence L
description binding site for residue CLA c 505
source : AR8

53) chain c
residue 445
type
sequence A
description binding site for residue CLA c 505
source : AR8

54) chain c
residue 449
type
sequence R
description binding site for residue CLA c 505
source : AR8

55) chain c
residue 161
type
sequence L
description binding site for residue CLA c 506
source : AR9

56) chain c
residue 165
type
sequence L
description binding site for residue CLA c 506
source : AR9

57) chain c
residue 214
type
sequence L
description binding site for residue CLA c 506
source : AR9

58) chain c
residue 243
type
sequence I
description binding site for residue CLA c 506
source : AR9

59) chain c
residue 247
type
sequence G
description binding site for residue CLA c 506
source : AR9

60) chain c
residue 250
type
sequence W
description binding site for residue CLA c 506
source : AR9

61) chain c
residue 251
type
sequence H
description binding site for residue CLA c 506
source : AR9

62) chain c
residue 254
type
sequence T
description binding site for residue CLA c 506
source : AR9

63) chain c
residue 255
type
sequence T
description binding site for residue CLA c 506
source : AR9

64) chain c
residue 256
type
sequence P
description binding site for residue CLA c 506
source : AR9

65) chain c
residue 257
type
sequence F
description binding site for residue CLA c 506
source : AR9

66) chain c
residue 259
type
sequence W
description binding site for residue CLA c 506
source : AR9

67) chain c
residue 157
type
sequence M
description binding site for residue CLA c 507
source : AS1

68) chain c
residue 158
type
sequence T
description binding site for residue CLA c 507
source : AS1

69) chain c
residue 161
type
sequence L
description binding site for residue CLA c 507
source : AS1

70) chain c
residue 164
type
sequence H
description binding site for residue CLA c 507
source : AS1

71) chain c
residue 168
type
sequence L
description binding site for residue CLA c 507
source : AS1

72) chain c
residue 259
type
sequence W
description binding site for residue CLA c 507
source : AS1

73) chain c
residue 264
type
sequence F
description binding site for residue CLA c 507
source : AS1

74) chain c
residue 266
type
sequence W
description binding site for residue CLA c 507
source : AS1

75) chain c
residue 271
type
sequence Y
description binding site for residue CLA c 507
source : AS1

76) chain c
residue 274
type
sequence Y
description binding site for residue CLA c 507
source : AS1

77) chain c
residue 275
type
sequence S
description binding site for residue CLA c 507
source : AS1

78) chain c
residue 282
type
sequence M
description binding site for residue CLA c 507
source : AS1

79) chain c
residue 36
type
sequence W
description binding site for residue CLA c 508
source : AS2

80) chain c
residue 37
type
sequence A
description binding site for residue CLA c 508
source : AS2

81) chain c
residue 38
type
sequence G
description binding site for residue CLA c 508
source : AS2

82) chain c
residue 39
type
sequence N
description binding site for residue CLA c 508
source : AS2

83) chain c
residue 276
type
sequence L
description binding site for residue CLA c 508
source : AS2

84) chain c
residue 436
type
sequence F
description binding site for residue CLA c 508
source : AS2

85) chain c
residue 440
type
sequence G
description binding site for residue CLA c 508
source : AS2

86) chain c
residue 443
type
sequence W
description binding site for residue CLA c 508
source : AS2

87) chain c
residue 444
type
sequence H
description binding site for residue CLA c 508
source : AS2

88) chain c
residue 447
type
sequence R
description binding site for residue CLA c 508
source : AS2

89) chain c
residue 39
type
sequence N
description binding site for residue CLA c 509
source : AS3

90) chain c
residue 49
type
sequence L
description binding site for residue CLA c 509
source : AS3

91) chain c
residue 52
type
sequence A
description binding site for residue CLA c 509
source : AS3

92) chain c
residue 53
type
sequence H
description binding site for residue CLA c 509
source : AS3

93) chain c
residue 56
type
sequence H
description binding site for residue CLA c 509
source : AS3

94) chain c
residue 149
type
sequence Y
description binding site for residue CLA c 509
source : AS3

95) chain c
residue 151
type
sequence W
description binding site for residue CLA c 509
source : AS3

96) chain c
residue 268
type
sequence G
description binding site for residue CLA c 509
source : AS3

97) chain c
residue 271
type
sequence Y
description binding site for residue CLA c 509
source : AS3

98) chain c
residue 272
type
sequence L
description binding site for residue CLA c 509
source : AS3

99) chain c
residue 275
type
sequence S
description binding site for residue CLA c 509
source : AS3

100) chain c
residue 39
type
sequence N
description binding site for residue CLA c 510
source : AS4

101) chain c
residue 56
type
sequence H
description binding site for residue CLA c 510
source : AS4

102) chain c
residue 59
type
sequence L
description binding site for residue CLA c 510
source : AS4

103) chain c
residue 436
type
sequence F
description binding site for residue CLA c 510
source : AS4

104) chain c
residue 437
type
sequence F
description binding site for residue CLA c 510
source : AS4

105) chain c
residue 24
type
sequence T
description binding site for residue CLA c 511
source : AS5

106) chain c
residue 26
type
sequence R
description binding site for residue CLA c 511
source : AS5

107) chain c
residue 35
type
sequence W
description binding site for residue CLA c 511
source : AS5

108) chain c
residue 38
type
sequence G
description binding site for residue CLA c 511
source : AS5

109) chain c
residue 39
type
sequence N
description binding site for residue CLA c 511
source : AS5

110) chain c
residue 41
type
sequence R
description binding site for residue CLA c 511
source : AS5

111) chain c
residue 42
type
sequence L
description binding site for residue CLA c 511
source : AS5

112) chain c
residue 48
type
sequence K
description binding site for residue CLA c 511
source : AS5

113) chain c
residue 52
type
sequence A
description binding site for residue CLA c 511
source : AS5

114) chain c
residue 123
type
sequence A
description binding site for residue CLA c 511
source : AS5

115) chain c
residue 127
type
sequence F
description binding site for residue CLA c 511
source : AS5

116) chain c
residue 134
type
sequence I
description binding site for residue CLA c 511
source : AS5

117) chain c
residue 53
type
sequence H
description binding site for residue CLA c 512
source : AS6

118) chain c
residue 57
type
sequence A
description binding site for residue CLA c 512
source : AS6

119) chain c
residue 146
type
sequence F
description binding site for residue CLA c 512
source : AS6

120) chain c
residue 147
type
sequence F
description binding site for residue CLA c 512
source : AS6

121) chain c
residue 163
type
sequence F
description binding site for residue CLA c 512
source : AS6

122) chain c
residue 164
type
sequence H
description binding site for residue CLA c 512
source : AS6

123) chain c
residue 167
type
sequence V
description binding site for residue CLA c 512
source : AS6

124) chain c
residue 171
type
sequence G
description binding site for residue CLA c 512
source : AS6

125) chain c
residue 50
type
sequence L
description binding site for residue CLA c 513
source : AS7

126) chain c
residue 124
type
sequence V
description binding site for residue CLA c 513
source : AS7

127) chain c
residue 128
type
sequence G
description binding site for residue CLA c 513
source : AS7

128) chain c
residue 131
type
sequence Y
description binding site for residue CLA c 513
source : AS7

129) chain c
residue 132
type
sequence H
description binding site for residue CLA c 513
source : AS7

130) chain c
residue 140
type
sequence L
description binding site for residue CLA c 513
source : AS7

131) chain c
residue 143
type
sequence Y
description binding site for residue CLA c 513
source : AS7

132) chain c
residue 147
type
sequence F
description binding site for residue CLA c 513
source : AS7

133) chain c
residue 121
type
sequence S
description binding site for residue BCR c 514
source : AS8

134) chain c
residue 124
type
sequence V
description binding site for residue BCR c 514
source : AS8

135) chain c
residue 125
type
sequence L
description binding site for residue BCR c 514
source : AS8

136) chain c
residue 209
type
sequence I
description binding site for residue BCR c 515
source : AS9

137) chain c
residue 212
type
sequence Y
description binding site for residue BCR c 515
source : AS9

138) chain c
residue 213
type
sequence L
description binding site for residue BCR c 515
source : AS9

139) chain c
residue 224
type
sequence I
description binding site for residue BCR c 515
source : AS9

140) chain c
residue 237
type
sequence H
description binding site for residue BCR c 515
source : AS9

141) chain c
residue 264
type
sequence F
description binding site for residue BCR c 515
source : AS9

142) chain c
residue 217
type
sequence P
description binding site for residue DGD c 516
source : AT1

143) chain c
residue 219
type
sequence G
description binding site for residue DGD c 516
source : AT1

144) chain c
residue 220
type
sequence G
description binding site for residue DGD c 516
source : AT1

145) chain c
residue 221
type
sequence E
description binding site for residue DGD c 516
source : AT1

146) chain c
residue 222
type
sequence G
description binding site for residue DGD c 516
source : AT1

147) chain c
residue 223
type
sequence W
description binding site for residue DGD c 516
source : AT1

148) chain c
residue 288
type
sequence C
description binding site for residue DGD c 516
source : AT1

149) chain c
residue 292
type
sequence F
description binding site for residue DGD c 516
source : AT1

150) chain c
residue 293
type
sequence N
description binding site for residue DGD c 516
source : AT1

151) chain c
residue 294
type
sequence N
description binding site for residue DGD c 516
source : AT1

152) chain c
residue 295
type
sequence T
description binding site for residue DGD c 516
source : AT1

153) chain c
residue 360
type
sequence D
description binding site for residue DGD c 516
source : AT1

154) chain c
residue 361
type
sequence F
description binding site for residue DGD c 516
source : AT1

155) chain c
residue 362
type
sequence R
description binding site for residue DGD c 516
source : AT1

156) chain c
residue 83
type
sequence E
description binding site for residue DGD c 517
source : AT2

157) chain c
residue 84
type
sequence Q
description binding site for residue DGD c 517
source : AT2

158) chain c
residue 85
type
sequence G
description binding site for residue DGD c 517
source : AT2

159) chain c
residue 404
type
sequence L
description binding site for residue DGD c 517
source : AT2

160) chain c
residue 406
type
sequence S
description binding site for residue DGD c 517
source : AT2

161) chain c
residue 418
type
sequence N
description binding site for residue DGD c 517
source : AT2

162) chain c
residue 419
type
sequence F
description binding site for residue DGD c 517
source : AT2

163) chain c
residue 420
type
sequence V
description binding site for residue DGD c 517
source : AT2

164) chain c
residue 425
type
sequence W
description binding site for residue DGD c 517
source : AT2

165) chain c
residue 428
type
sequence T
description binding site for residue DGD c 517
source : AT2

166) chain c
residue 405
type
sequence N
description binding site for residue DGD c 518
source : AT3

167) chain c
residue 415
type
sequence N
description binding site for residue DGD c 518
source : AT3

168) chain c
residue 416
type
sequence S
description binding site for residue DGD c 518
source : AT3

169) chain c
residue 418
type
sequence N
description binding site for residue DGD c 518
source : AT3

170) chain c
residue 74
type
sequence H
description binding site for residue LMG c 519
source : AT4

171) chain c
residue 433
type
sequence L
description binding site for residue LMG c 519
source : AT4

172) chain c
residue 97
type
sequence W
description binding site for residue STE c 520
source : AT5

173) chain c
residue 113
type
sequence V
description binding site for residue STE c 520
source : AT5

174) chain c
residue 117
type
sequence V
description binding site for residue STE c 520
source : AT5

175) chain c
residue 121
type
sequence S
description binding site for residue STE c 520
source : AT5

176) chain c
residue 204
type
sequence L
description binding site for residue LMG c 521
source : AT6

177) chain c
residue 214
type
sequence L
description binding site for residue LMG c 522
source : AT7

178) chain c
residue 215
type
sequence K
description binding site for residue LMG c 522
source : AT7

179) chain c
residue 216
type
sequence S
description binding site for residue LMG c 522
source : AT7

180) chain c
residue 221
type
sequence E
description binding site for residue LMG c 522
source : AT7

181) chain c
residue 223
type
sequence W
description binding site for residue LMG c 522
source : AT7

182) chain c
residue 281
type
sequence M
description binding site for residue LMG c 522
source : AT7

183) chain c
residue 443
type
sequence W
description binding site for residue LHG d 409
source : AU7

184) chain c
residue 447
type
sequence R
description binding site for residue LHG d 409
source : AU7

185) chain c
residue 62
type
sequence F
description binding site for residue BCR k 102
source : AV7

186) chain c
residue 55
type
sequence A
description binding site for residue BCR k 103
source : AV8

187) chain c
residue 58
type
sequence G
description binding site for residue BCR k 103
source : AV8

188) chain c
residue 59
type
sequence L
description binding site for residue BCR k 103
source : AV8

189) chain c
residue 122
type
sequence S
description binding site for residue BCR k 103
source : AV8

190) chain c
residue 123
type
sequence A
description binding site for residue BCR k 103
source : AV8

191) chain c
residue 126
type
sequence G
description binding site for residue BCR k 103
source : AV8

192) chain c
residue 266-280
type TOPO_DOM
sequence WSGEAYLSYSLGALS
description Lumenal
source Swiss-Prot : SWS_FT_FI1

193) chain c
residue 462-473
type TOPO_DOM
sequence ESEPVLSMPSLD
description Lumenal
source Swiss-Prot : SWS_FT_FI1

194) chain c
residue 281-301
type TRANSMEM
sequence MMGFIATCFVWFNNTVYPSEF
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

195) chain c
residue 437-461
type TRANSMEM
sequence FLVGHLWHAGRARAAAAGFEKGIDR
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2


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