eF-site ID 6w1p-D PDB Code 6w1p Chain D click to enlarge Title RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence D:  RGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTG TTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLL LWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFE IARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAP SFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLC AIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANR FWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLAL NLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAP QDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain D residue 214 type sequence H description binding site for residue FE2 A 401 source : AC1 2) chain D residue 268 type sequence H description binding site for residue FE2 A 401 source : AC1 3) chain D residue 205 type sequence L description binding site for residue CLA A 402 source : AC2 4) chain D residue 175 type sequence V description binding site for residue CLA A 403 source : AC3 5) chain D residue 179 type sequence F description binding site for residue CLA A 403 source : AC3 6) chain D residue 182 type sequence L description binding site for residue CLA A 403 source : AC3 7) chain D residue 209 type sequence L description binding site for residue PHO A 404 source : AC4 8) chain D residue 213 type sequence I description binding site for residue PHO A 404 source : AC4 9) chain D residue 253 type sequence W description binding site for residue PHO A 404 source : AC4 10) chain D residue 317 type sequence K description binding site for residue CL A 407 source : AC7 11) chain D residue 214 type sequence H description binding site for residue BCT A 409 source : AC9 12) chain D residue 244 type sequence Y description binding site for residue BCT A 409 source : AC9 13) chain D residue 268 type sequence H description binding site for residue BCT A 409 source : AC9 14) chain D residue 45 type sequence L description binding site for residue PL9 A 410 source : AD1 15) chain D residue 220 type sequence N description binding site for residue LHG A 411 source : AD2 16) chain D residue 229 type sequence A description binding site for residue LHG A 411 source : AD2 17) chain D residue 230 type sequence S description binding site for residue LHG A 411 source : AD2 18) chain D residue 231 type sequence T description binding site for residue LHG A 411 source : AD2 19) chain D residue 232 type sequence F description binding site for residue LHG A 411 source : AD2 20) chain D residue 230 type sequence S description binding site for residue SQD A 412 source : AD3 21) chain D residue 232 type sequence F description binding site for residue SQD A 412 source : AD3 22) chain D residue 233 type sequence R description binding site for residue SQD A 412 source : AD3 23) chain D residue 158 type sequence L description binding site for residue CLA B 603 source : AE1 24) chain D residue 120 type sequence F description binding site for residue CLA B 609 source : AE7 25) chain D residue 123 type sequence I description binding site for residue CLA B 609 source : AE7 26) chain D residue 126 type sequence M description binding site for residue CLA B 609 source : AE7 27) chain D residue 150 type sequence I description binding site for residue CLA B 609 source : AE7 28) chain D residue 141 type sequence Y description binding site for residue LHG B 622 source : AG2 29) chain D residue 269 type sequence F description binding site for residue LHG B 622 source : AG2 30) chain D residue 48 type sequence W description binding site for residue PHO D 401 source : AJ2 31) chain D residue 114 type sequence I description binding site for residue PHO D 401 source : AJ2 32) chain D residue 121 type sequence G description binding site for residue PHO D 401 source : AJ2 33) chain D residue 122 type sequence L description binding site for residue PHO D 401 source : AJ2 34) chain D residue 125 type sequence F description binding site for residue PHO D 401 source : AJ2 35) chain D residue 129 type sequence Q description binding site for residue PHO D 401 source : AJ2 36) chain D residue 142 type sequence N description binding site for residue PHO D 401 source : AJ2 37) chain D residue 146 type sequence F description binding site for residue PHO D 401 source : AJ2 38) chain D residue 153 type sequence F description binding site for residue PHO D 401 source : AJ2 39) chain D residue 174 type sequence G description binding site for residue PHO D 401 source : AJ2 40) chain D residue 275 type sequence P description binding site for residue PHO D 401 source : AJ2 41) chain D residue 149 type sequence P description binding site for residue CLA D 402 source : AJ3 42) chain D residue 152 type sequence V description binding site for residue CLA D 402 source : AJ3 43) chain D residue 156 type sequence V description binding site for residue CLA D 402 source : AJ3 44) chain D residue 182 type sequence L description binding site for residue CLA D 402 source : AJ3 45) chain D residue 185 type sequence F description binding site for residue CLA D 402 source : AJ3 46) chain D residue 191 type sequence W description binding site for residue CLA D 402 source : AJ3 47) chain D residue 197 type sequence H description binding site for residue CLA D 402 source : AJ3 48) chain D residue 200 type sequence G description binding site for residue CLA D 402 source : AJ3 49) chain D residue 201 type sequence V description binding site for residue CLA D 402 source : AJ3 50) chain D residue 282 type sequence S description binding site for residue CLA D 402 source : AJ3 51) chain D residue 283 type sequence A description binding site for residue CLA D 402 source : AJ3 52) chain D residue 198 type sequence M description binding site for residue CLA D 403 source : AJ4 53) chain D residue 201 type sequence V description binding site for residue CLA D 403 source : AJ4 54) chain D residue 202 type sequence A description binding site for residue CLA D 403 source : AJ4 55) chain D residue 205 type sequence L description binding site for residue CLA D 403 source : AJ4 56) chain D residue 35 type sequence I description binding site for residue CLA D 404 source : AJ5 57) chain D residue 40 type sequence C description binding site for residue CLA D 404 source : AJ5 58) chain D residue 43 type sequence L description binding site for residue CLA D 404 source : AJ5 59) chain D residue 89 type sequence L description binding site for residue CLA D 404 source : AJ5 60) chain D residue 90 type sequence L description binding site for residue CLA D 404 source : AJ5 61) chain D residue 91 type sequence L description binding site for residue CLA D 404 source : AJ5 62) chain D residue 92 type sequence L description binding site for residue CLA D 404 source : AJ5 63) chain D residue 93 type sequence W description binding site for residue CLA D 404 source : AJ5 64) chain D residue 112 type sequence T description binding site for residue CLA D 404 source : AJ5 65) chain D residue 113 type sequence F description binding site for residue CLA D 404 source : AJ5 66) chain D residue 116 type sequence L description binding site for residue CLA D 404 source : AJ5 67) chain D residue 117 type sequence H description binding site for residue CLA D 404 source : AJ5 68) chain D residue 42 type sequence Y description binding site for residue BCR D 405 source : AJ6 69) chain D residue 46 type sequence G description binding site for residue BCR D 405 source : AJ6 70) chain D residue 47 type sequence G description binding site for residue BCR D 405 source : AJ6 71) chain D residue 49 type sequence L description binding site for residue BCR D 405 source : AJ6 72) chain D residue 50 type sequence T description binding site for residue BCR D 405 source : AJ6 73) chain D residue 198 type sequence M description binding site for residue PL9 D 406 source : AJ7 74) chain D residue 199 type sequence M description binding site for residue PL9 D 406 source : AJ7 75) chain D residue 214 type sequence H description binding site for residue PL9 D 406 source : AJ7 76) chain D residue 217 type sequence T description binding site for residue PL9 D 406 source : AJ7 77) chain D residue 246 type sequence M description binding site for residue PL9 D 406 source : AJ7 78) chain D residue 253 type sequence W description binding site for residue PL9 D 406 source : AJ7 79) chain D residue 260 type sequence A description binding site for residue PL9 D 406 source : AJ7 80) chain D residue 261 type sequence F description binding site for residue PL9 D 406 source : AJ7 81) chain D residue 267 type sequence L description binding site for residue PL9 D 406 source : AJ7 82) chain D residue 67 type sequence Y description binding site for residue LMG D 407 source : AJ8 83) chain D residue 70 type sequence G description binding site for residue LMG D 407 source : AJ8 84) chain D residue 71 type sequence C description binding site for residue LMG D 407 source : AJ8 85) chain D residue 72 type sequence N description binding site for residue LMG D 407 source : AJ8 86) chain D residue 73 type sequence F description binding site for residue LMG D 407 source : AJ8 87) chain D residue 259 type sequence I description binding site for residue LHG D 408 source : AJ9 88) chain D residue 260 type sequence A description binding site for residue LHG D 408 source : AJ9 89) chain D residue 261 type sequence F description binding site for residue LHG D 408 source : AJ9 90) chain D residue 262 type sequence S description binding site for residue LHG D 408 source : AJ9 91) chain D residue 263 type sequence N description binding site for residue LHG D 408 source : AJ9 92) chain D residue 266 type sequence W description binding site for residue LHG D 408 source : AJ9 93) chain D residue 270 type sequence F description binding site for residue LHG D 408 source : AJ9 94) chain D residue 19 type sequence D description binding site for residue LMG D 409 source : AK1 95) chain D residue 23 type sequence K description binding site for residue LMG D 409 source : AK1 96) chain D residue 32 type sequence W description binding site for residue LMG D 409 source : AK1 97) chain D residue 36 type sequence L description binding site for residue LMG D 410 source : AK2 98) chain D residue 134 type sequence R description binding site for residue LMG D 410 source : AK2 99) chain D residue 93 type sequence W description binding site for residue STE D 411 source : AK3 100) chain D residue 98 type sequence Q description binding site for residue STE D 411 source : AK3 101) chain D residue 99 type sequence G description binding site for residue STE D 411 source : AK3 102) chain D residue 24 type sequence R description binding site for residue SQD F 101 source : AK6 103) chain D residue 26 type sequence R description binding site for residue SQD F 101 source : AK6 104) chain D residue 87 type sequence H description binding site for residue DGD H 102 source : AK8 105) chain D residue 162 type sequence L description binding site for residue DGD H 102 source : AK8 106) chain D residue 291 type sequence L description binding site for residue DGD H 102 source : AK8 107) chain D residue 266 type sequence W description binding site for residue LHG L 102 source : AL5 108) chain D residue 190-216 type prosite sequence NWTLNPFHMMGVAGVLGGALLCAIHGA description REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA source prosite : PS00244 109) chain D residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 110) chain D residue 266-288 type TRANSMEM sequence WLHFFMLFVPVTGLWMSAIGVVG description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 111) chain D residue 289-352 type TOPO_DOM sequence LALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAW MAPQDQPHENFVFPEEVLPRGNAL description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI3 112) chain D residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 113) chain D residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 114) chain D residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 115) chain D residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9

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