eF-site ID 6w1o-a PDB Code 6w1o Chain a click to enlarge Title RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence a:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain a residue 72 type sequence L description binding site for residue STE B 627 source : AG5 2) chain a residue 215 type sequence H description binding site for residue FE2 a 401 source : AM7 3) chain a residue 272 type sequence H description binding site for residue FE2 a 401 source : AM7 4) chain a residue 147 type sequence Y description binding site for residue CLA a 402 source : AM8 5) chain a residue 150 type sequence P description binding site for residue CLA a 402 source : AM8 6) chain a residue 153 type sequence S description binding site for residue CLA a 402 source : AM8 7) chain a residue 157 type sequence V description binding site for residue CLA a 402 source : AM8 8) chain a residue 183 type sequence M description binding site for residue CLA a 402 source : AM8 9) chain a residue 186 type sequence F description binding site for residue CLA a 402 source : AM8 10) chain a residue 187 type sequence Q description binding site for residue CLA a 402 source : AM8 11) chain a residue 192 type sequence I description binding site for residue CLA a 402 source : AM8 12) chain a residue 198 type sequence H description binding site for residue CLA a 402 source : AM8 13) chain a residue 201 type sequence G description binding site for residue CLA a 402 source : AM8 14) chain a residue 206 type sequence F description binding site for residue CLA a 402 source : AM8 15) chain a residue 286 type sequence T description binding site for residue CLA a 402 source : AM8 16) chain a residue 287 type sequence A description binding site for residue CLA a 402 source : AM8 17) chain a residue 290 type sequence I description binding site for residue CLA a 402 source : AM8 18) chain a residue 199 type sequence Q description binding site for residue CLA a 403 source : AM9 19) chain a residue 202 type sequence V description binding site for residue CLA a 403 source : AM9 20) chain a residue 203 type sequence A description binding site for residue CLA a 403 source : AM9 21) chain a residue 206 type sequence F description binding site for residue CLA a 403 source : AM9 22) chain a residue 207 type sequence G description binding site for residue CLA a 403 source : AM9 23) chain a residue 210 type sequence L description binding site for residue CLA a 403 source : AM9 24) chain a residue 278 type sequence W description binding site for residue CLA a 403 source : AM9 25) chain a residue 41 type sequence L description binding site for residue PHO a 404 source : AN1 26) chain a residue 44 type sequence A description binding site for residue PHO a 404 source : AN1 27) chain a residue 45 type sequence T description binding site for residue PHO a 404 source : AN1 28) chain a residue 48 type sequence F description binding site for residue PHO a 404 source : AN1 29) chain a residue 126 type sequence Y description binding site for residue PHO a 404 source : AN1 30) chain a residue 130 type sequence Q description binding site for residue PHO a 404 source : AN1 31) chain a residue 147 type sequence Y description binding site for residue PHO a 404 source : AN1 32) chain a residue 40 type sequence T description binding site for residue CLA a 405 source : AN2 33) chain a residue 93 type sequence F description binding site for residue CLA a 405 source : AN2 34) chain a residue 95 type sequence P description binding site for residue CLA a 405 source : AN2 35) chain a residue 96 type sequence I description binding site for residue CLA a 405 source : AN2 36) chain a residue 97 type sequence W description binding site for residue CLA a 405 source : AN2 37) chain a residue 114 type sequence L description binding site for residue CLA a 405 source : AN2 38) chain a residue 118 type sequence H description binding site for residue CLA a 405 source : AN2 39) chain a residue 42 type sequence L description binding site for residue BCR a 406 source : AN3 40) chain a residue 43 type sequence A description binding site for residue BCR a 406 source : AN3 41) chain a residue 46 type sequence I description binding site for residue BCR a 406 source : AN3 42) chain a residue 96 type sequence I description binding site for residue BCR a 406 source : AN3 43) chain a residue 181 type sequence N description binding site for residue CL a 407 source : AN4 44) chain a residue 332 type sequence H description binding site for residue CL a 407 source : AN4 45) chain a residue 333 type sequence E description binding site for residue CL a 407 source : AN4 46) chain a residue 337 type sequence H description binding site for residue CL a 408 source : AN5 47) chain a residue 338 type sequence N description binding site for residue CL a 408 source : AN5 48) chain a residue 211 type sequence F description binding site for residue PL9 a 409 source : AN6 49) chain a residue 215 type sequence H description binding site for residue PL9 a 409 source : AN6 50) chain a residue 218 type sequence L description binding site for residue PL9 a 409 source : AN6 51) chain a residue 255 type sequence F description binding site for residue PL9 a 409 source : AN6 52) chain a residue 263 type sequence A description binding site for residue PL9 a 409 source : AN6 53) chain a residue 264 type sequence S description binding site for residue PL9 a 409 source : AN6 54) chain a residue 265 type sequence F description binding site for residue PL9 a 409 source : AN6 55) chain a residue 271 type sequence L description binding site for residue PL9 a 409 source : AN6 56) chain a residue 274 type sequence F description binding site for residue PL9 a 409 source : AN6 57) chain a residue 158 type sequence F description binding site for residue CLA a 410 source : AN7 58) chain a residue 176 type sequence I description binding site for residue CLA a 410 source : AN7 59) chain a residue 179 type sequence T description binding site for residue CLA a 410 source : AN7 60) chain a residue 183 type sequence M description binding site for residue CLA a 410 source : AN7 61) chain a residue 200 type sequence L description binding site for residue SQD a 411 source : AN8 62) chain a residue 267 type sequence N description binding site for residue SQD a 411 source : AN8 63) chain a residue 270 type sequence S description binding site for residue SQD a 411 source : AN8 64) chain a residue 277 type sequence A description binding site for residue SQD a 411 source : AN8 65) chain a residue 281 type sequence V description binding site for residue SQD a 411 source : AN8 66) chain a residue 282 type sequence G description binding site for residue SQD a 411 source : AN8 67) chain a residue 28 type sequence L description binding site for residue SQD a 412 source : AN9 68) chain a residue 30 type sequence V description binding site for residue SQD a 412 source : AN9 69) chain a residue 42 type sequence L description binding site for residue SQD a 412 source : AN9 70) chain a residue 53 type sequence I description binding site for residue STE a 413 source : AO1 71) chain a residue 16 type sequence R description binding site for residue STE a 414 source : AO2 72) chain a residue 50 type sequence I description binding site for residue LMG a 415 source : AO3 73) chain a residue 101 type sequence S description binding site for residue LMG a 415 source : AO3 74) chain a residue 102 type sequence L description binding site for residue LMG a 415 source : AO3 75) chain a residue 103 type sequence D description binding site for residue LMG a 415 source : AO3 76) chain a residue 170 type sequence D description binding site for residue OEX a 416 source : AO4 77) chain a residue 189 type sequence E description binding site for residue OEX a 416 source : AO4 78) chain a residue 332 type sequence H description binding site for residue OEX a 416 source : AO4 79) chain a residue 333 type sequence E description binding site for residue OEX a 416 source : AO4 80) chain a residue 337 type sequence H description binding site for residue OEX a 416 source : AO4 81) chain a residue 342 type sequence D description binding site for residue OEX a 416 source : AO4 82) chain a residue 344 type sequence A description binding site for residue OEX a 416 source : AO4 83) chain a residue 124 type sequence S description binding site for residue CLA c 506 source : AS1 84) chain a residue 131 type sequence W description binding site for residue CLA c 506 source : AS1 85) chain a residue 91 type sequence L description binding site for residue DGD c 517 source : AT3 86) chain a residue 297 type sequence L description binding site for residue DGD c 518 source : AT4 87) chain a residue 199 type sequence Q description binding site for residue DGD c 519 source : AT5 88) chain a residue 200 type sequence L description binding site for residue DGD c 519 source : AT5 89) chain a residue 300 type sequence F description binding site for residue DGD c 519 source : AT5 90) chain a residue 301 type sequence N description binding site for residue DGD c 519 source : AT5 91) chain a residue 302 type sequence F description binding site for residue DGD c 519 source : AT5 92) chain a residue 305 type sequence S description binding site for residue DGD c 519 source : AT5 93) chain a residue 97 type sequence W description binding site for residue LMG c 523 source : AT9 94) chain a residue 98 type sequence E description binding site for residue LMG c 523 source : AT9 95) chain a residue 155 type sequence F description binding site for residue LMG c 523 source : AT9 96) chain a residue 206 type sequence F description binding site for residue PHO d 401 source : AU1 97) chain a residue 209 type sequence A description binding site for residue PHO d 401 source : AU1 98) chain a residue 210 type sequence L description binding site for residue PHO d 401 source : AU1 99) chain a residue 214 type sequence M description binding site for residue PHO d 401 source : AU1 100) chain a residue 215 type sequence H description binding site for residue BCT d 402 source : AU2 101) chain a residue 244 type sequence E description binding site for residue BCT d 402 source : AU2 102) chain a residue 246 type sequence Y description binding site for residue BCT d 402 source : AU2 103) chain a residue 272 type sequence H description binding site for residue BCT d 402 source : AU2 104) chain a residue 183 type sequence M description binding site for residue CLA d 403 source : AU3 105) chain a residue 52 type sequence F description binding site for residue PL9 d 406 source : AU6 106) chain a residue 77 type sequence I description binding site for residue PL9 d 406 source : AU6 107) chain a residue 234 type sequence N description binding site for residue LHG d 407 source : AU7 108) chain a residue 37 type sequence M description binding site for residue LHG d 408 source : AU8 109) chain a residue 140 type sequence R description binding site for residue LHG d 409 source : AU9 110) chain a residue 142 type sequence W description binding site for residue LHG d 409 source : AU9 111) chain a residue 273 type sequence F description binding site for residue LHG d 409 source : AU9 112) chain a residue 260 type sequence F description binding site for residue LHG e 101 source : AV5 113) chain a residue 262 type sequence Y description binding site for residue LHG e 101 source : AV5 114) chain a residue 232 type sequence S description binding site for residue LHG l 101 source : AW4 115) chain a residue 234 type sequence N description binding site for residue LHG l 101 source : AW4 116) chain a residue 96 type sequence I description binding site for Di-peptide FME i 1 and GLU i 2 source : AW8 117) chain a residue 97 type sequence W description binding site for Di-peptide FME i 1 and GLU i 2 source : AW8 118) chain a residue 99 type sequence A description binding site for Di-peptide FME i 1 and GLU i 2 source : AW8 119) chain a residue 74 type sequence G description binding site for Di-peptide FME m 1 and GLU m 2 source : AW9 120) chain a residue 170 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 121) chain a residue 189 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 122) chain a residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 123) chain a residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 124) chain a residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 125) chain a residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14 126) chain a residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12 127) chain a residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13 128) chain a residue 192-217 type TOPO_DOM sequence ILMHPFHQLGVAGVFGGALFCAMHGS description Lumenal source Swiss-Prot : SWS_FT_FI1 129) chain a residue 273-295 type TOPO_DOM sequence FFLAAWPVVGVWFTALGISTMAF description Lumenal source Swiss-Prot : SWS_FT_FI1 130) chain a residue 118 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 131) chain a residue 198 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 132) chain a residue 215 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 133) chain a residue 272 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 134) chain a residue 126 type MOD_RES sequence Y description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5

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