eF-site ID 6w1o-D PDB Code 6w1o Chain D click to enlarge Title RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence D:  RGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTG TTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLL LWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFE IARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAP SFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLC AIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANR FWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLAL NLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAP QDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain D residue 214 type sequence H description binding site for residue FE2 A 401 source : AC1 2) chain D residue 268 type sequence H description binding site for residue FE2 A 401 source : AC1 3) chain D residue 205 type sequence L description binding site for residue CLA A 402 source : AC2 4) chain D residue 157 type sequence F description binding site for residue CLA A 403 source : AC3 5) chain D residue 175 type sequence V description binding site for residue CLA A 403 source : AC3 6) chain D residue 178 type sequence I description binding site for residue CLA A 403 source : AC3 7) chain D residue 179 type sequence F description binding site for residue CLA A 403 source : AC3 8) chain D residue 182 type sequence L description binding site for residue CLA A 403 source : AC3 9) chain D residue 208 type sequence A description binding site for residue PHO A 404 source : AC4 10) chain D residue 209 type sequence L description binding site for residue PHO A 404 source : AC4 11) chain D residue 213 type sequence I description binding site for residue PHO A 404 source : AC4 12) chain D residue 253 type sequence W description binding site for residue PHO A 404 source : AC4 13) chain D residue 317 type sequence K description binding site for residue CL A 407 source : AC7 14) chain D residue 42 type sequence Y description binding site for residue PL9 A 409 source : AC9 15) chain D residue 45 type sequence L description binding site for residue PL9 A 409 source : AC9 16) chain D residue 230 type sequence S description binding site for residue SQD A 411 source : AD2 17) chain D residue 232 type sequence F description binding site for residue SQD A 411 source : AD2 18) chain D residue 233 type sequence R description binding site for residue SQD A 411 source : AD2 19) chain D residue 159 type sequence I description binding site for residue CLA B 602 source : AD7 20) chain D residue 281 type sequence M description binding site for residue CLA B 607 source : AE3 21) chain D residue 123 type sequence I description binding site for residue CLA B 608 source : AE4 22) chain D residue 126 type sequence M description binding site for residue CLA B 608 source : AE4 23) chain D residue 32 type sequence W description binding site for residue LMG B 621 source : AF8 24) chain D residue 41 type sequence A description binding site for residue PHO D 401 source : AI8 25) chain D residue 48 type sequence W description binding site for residue PHO D 401 source : AI8 26) chain D residue 114 type sequence I description binding site for residue PHO D 401 source : AI8 27) chain D residue 121 type sequence G description binding site for residue PHO D 401 source : AI8 28) chain D residue 125 type sequence F description binding site for residue PHO D 401 source : AI8 29) chain D residue 129 type sequence Q description binding site for residue PHO D 401 source : AI8 30) chain D residue 142 type sequence N description binding site for residue PHO D 401 source : AI8 31) chain D residue 146 type sequence F description binding site for residue PHO D 401 source : AI8 32) chain D residue 153 type sequence F description binding site for residue PHO D 401 source : AI8 33) chain D residue 174 type sequence G description binding site for residue PHO D 401 source : AI8 34) chain D residue 275 type sequence P description binding site for residue PHO D 401 source : AI8 35) chain D residue 214 type sequence H description binding site for residue BCT D 402 source : AI9 36) chain D residue 244 type sequence Y description binding site for residue BCT D 402 source : AI9 37) chain D residue 264 type sequence K description binding site for residue BCT D 402 source : AI9 38) chain D residue 268 type sequence H description binding site for residue BCT D 402 source : AI9 39) chain D residue 149 type sequence P description binding site for residue CLA D 403 source : AJ1 40) chain D residue 152 type sequence V description binding site for residue CLA D 403 source : AJ1 41) chain D residue 156 type sequence V description binding site for residue CLA D 403 source : AJ1 42) chain D residue 182 type sequence L description binding site for residue CLA D 403 source : AJ1 43) chain D residue 185 type sequence F description binding site for residue CLA D 403 source : AJ1 44) chain D residue 191 type sequence W description binding site for residue CLA D 403 source : AJ1 45) chain D residue 197 type sequence H description binding site for residue CLA D 403 source : AJ1 46) chain D residue 200 type sequence G description binding site for residue CLA D 403 source : AJ1 47) chain D residue 201 type sequence V description binding site for residue CLA D 403 source : AJ1 48) chain D residue 282 type sequence S description binding site for residue CLA D 403 source : AJ1 49) chain D residue 283 type sequence A description binding site for residue CLA D 403 source : AJ1 50) chain D residue 286 type sequence V description binding site for residue CLA D 403 source : AJ1 51) chain D residue 198 type sequence M description binding site for residue CLA D 404 source : AJ2 52) chain D residue 201 type sequence V description binding site for residue CLA D 404 source : AJ2 53) chain D residue 202 type sequence A description binding site for residue CLA D 404 source : AJ2 54) chain D residue 35 type sequence I description binding site for residue CLA D 405 source : AJ3 55) chain D residue 40 type sequence C description binding site for residue CLA D 405 source : AJ3 56) chain D residue 43 type sequence L description binding site for residue CLA D 405 source : AJ3 57) chain D residue 89 type sequence L description binding site for residue CLA D 405 source : AJ3 58) chain D residue 90 type sequence L description binding site for residue CLA D 405 source : AJ3 59) chain D residue 91 type sequence L description binding site for residue CLA D 405 source : AJ3 60) chain D residue 92 type sequence L description binding site for residue CLA D 405 source : AJ3 61) chain D residue 93 type sequence W description binding site for residue CLA D 405 source : AJ3 62) chain D residue 112 type sequence T description binding site for residue CLA D 405 source : AJ3 63) chain D residue 113 type sequence F description binding site for residue CLA D 405 source : AJ3 64) chain D residue 116 type sequence L description binding site for residue CLA D 405 source : AJ3 65) chain D residue 117 type sequence H description binding site for residue CLA D 405 source : AJ3 66) chain D residue 198 type sequence M description binding site for residue PL9 D 406 source : AJ4 67) chain D residue 199 type sequence M description binding site for residue PL9 D 406 source : AJ4 68) chain D residue 202 type sequence A description binding site for residue PL9 D 406 source : AJ4 69) chain D residue 209 type sequence L description binding site for residue PL9 D 406 source : AJ4 70) chain D residue 214 type sequence H description binding site for residue PL9 D 406 source : AJ4 71) chain D residue 217 type sequence T description binding site for residue PL9 D 406 source : AJ4 72) chain D residue 246 type sequence M description binding site for residue PL9 D 406 source : AJ4 73) chain D residue 253 type sequence W description binding site for residue PL9 D 406 source : AJ4 74) chain D residue 260 type sequence A description binding site for residue PL9 D 406 source : AJ4 75) chain D residue 261 type sequence F description binding site for residue PL9 D 406 source : AJ4 76) chain D residue 267 type sequence L description binding site for residue PL9 D 406 source : AJ4 77) chain D residue 67 type sequence Y description binding site for residue LMG D 407 source : AJ5 78) chain D residue 70 type sequence G description binding site for residue LMG D 407 source : AJ5 79) chain D residue 71 type sequence C description binding site for residue LMG D 407 source : AJ5 80) chain D residue 72 type sequence N description binding site for residue LMG D 407 source : AJ5 81) chain D residue 73 type sequence F description binding site for residue LMG D 407 source : AJ5 82) chain D residue 24 type sequence R description binding site for residue SQD D 408 source : AJ6 83) chain D residue 26 type sequence R description binding site for residue SQD D 408 source : AJ6 84) chain D residue 257 type sequence F description binding site for residue LHG D 409 source : AJ7 85) chain D residue 260 type sequence A description binding site for residue LHG D 409 source : AJ7 86) chain D residue 261 type sequence F description binding site for residue LHG D 409 source : AJ7 87) chain D residue 262 type sequence S description binding site for residue LHG D 409 source : AJ7 88) chain D residue 263 type sequence N description binding site for residue LHG D 409 source : AJ7 89) chain D residue 266 type sequence W description binding site for residue LHG D 409 source : AJ7 90) chain D residue 219 type sequence E description binding site for residue LHG D 410 source : AJ8 91) chain D residue 220 type sequence N description binding site for residue LHG D 410 source : AJ8 92) chain D residue 229 type sequence A description binding site for residue LHG D 410 source : AJ8 93) chain D residue 230 type sequence S description binding site for residue LHG D 410 source : AJ8 94) chain D residue 231 type sequence T description binding site for residue LHG D 410 source : AJ8 95) chain D residue 232 type sequence F description binding site for residue LHG D 410 source : AJ8 96) chain D residue 19 type sequence D description binding site for residue LMG D 411 source : AJ9 97) chain D residue 23 type sequence K description binding site for residue LMG D 411 source : AJ9 98) chain D residue 32 type sequence W description binding site for residue LMG D 411 source : AJ9 99) chain D residue 141 type sequence Y description binding site for residue LHG D 412 source : AK1 100) chain D residue 266 type sequence W description binding site for residue LHG D 412 source : AK1 101) chain D residue 269 type sequence F description binding site for residue LHG D 412 source : AK1 102) chain D residue 277 type sequence T description binding site for residue LHG D 412 source : AK1 103) chain D residue 93 type sequence W description binding site for residue STE D 413 source : AK2 104) chain D residue 99 type sequence G description binding site for residue STE D 413 source : AK2 105) chain D residue 28 type sequence V description binding site for residue LHG E 101 source : AK3 106) chain D residue 128 type sequence R description binding site for residue LHG E 101 source : AK3 107) chain D residue 42 type sequence Y description binding site for residue BCR F 101 source : AK5 108) chain D residue 46 type sequence G description binding site for residue BCR F 101 source : AK5 109) chain D residue 47 type sequence G description binding site for residue BCR F 101 source : AK5 110) chain D residue 49 type sequence L description binding site for residue BCR F 101 source : AK5 111) chain D residue 50 type sequence T description binding site for residue BCR F 101 source : AK5 112) chain D residue 87 type sequence H description binding site for residue DGD H 103 source : AK9 113) chain D residue 162 type sequence L description binding site for residue DGD H 103 source : AK9 114) chain D residue 266 type sequence W description binding site for residue LHG L 102 source : AL8 115) chain D residue 190-216 type prosite sequence NWTLNPFHMMGVAGVLGGALLCAIHGA description REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA source prosite : PS00244 116) chain D residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 117) chain D residue 266-288 type TRANSMEM sequence WLHFFMLFVPVTGLWMSAIGVVG description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 118) chain D residue 289-352 type TOPO_DOM sequence LALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAW MAPQDQPHENFVFPEEVLPRGNAL description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI3 119) chain D residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 120) chain D residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 121) chain D residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 122) chain D residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9

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