eF-site ID 6v3d-0123CDEFGHIJKLMNOPQRSTUVWXYZ PDB Code 6v3d Chain 0, 1, 2, 3, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z click to enlarge Title Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit Classification RIBOSOME Compound 50S ribosomal protein L33 Source ORGANISM_SCIENTIFIC: Acinetobacter sp. CIP 51.11; Sequence 0:  MRDKIRLVSSAGTGYFYTTTKNKRTMPEKMEIKKFDPKIR QHVIFKEAKIK 1:  MKRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRH SLTV 2:  AKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIR QLRGCVMVHVSDVASVRRMCPYI 3:  MKVQASVKKICGSCKVIRRNGVIRVICSAEPRHKQRQG C:  QKCKPTSPGRRFVEKVVHDHLHKGAPYAPLVEAKKRTGGR NNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEY DPNRTAHIALLKYADGERRYIIAPKGLRAGDKVQSGNDAP IRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQ LLGRDGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLR SLGKAGAARWRGVRPTVRGMAMNPIDHPHGGGEGRNKGIQ PVSPWGQKAKGYKTRTNKRTTKMIIRDRRV D:  AIGLVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTL ETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVK EFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGF QGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKG KKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATG GDVIVRPTIKA E:  SEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSG GGKKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQ KVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPKTKEL LAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATA IDPVSLIAFDKVVMSVAAAKKIEVEL F:  RLKARYNDELKAKLQEELSIKNVMEIPRITKITLNMGVGA AATDKKLLDGAVADMQLIAGQKPVVTLARKSIAGFKIRDG WPIGCKVTLRGDQMYEFLDRLISIAIPRIRDFRGFSAKSF DGRGNYSMGLKEQIVFPEIDFDKIDRIRGMDITITTTART DDEGRALMRAFGFPF G:  SRVAKAPVTVPNGVTVTQNGRQVEVKGSKGTLSFNLHALV ELKQEEGKLQLAPAKESKDAWMQAGTARAVLNNLVKGVSE GFERKLQLVGVGYKAAVKGTVVNLNLGYSHPIDYALPEGV TAETPTATEIILKSANKQLLGQVAAEIRAYRSPEPYKGKG VRYSDEVILRKEAK H:  MDVILLQRIKNLGKLGDKVSVKAGYGRNFLIPQGKAVAAT EANTAAFEARRAELEKQEAE I:  MKTLSAKPAEVQHDWFVVDATGKTLGRLATEIARRLRGKH KTSYTPHVDTGDYIIVINAEQVQVTGNKALDKKYYRHTEF PGGLKETNFEKLVAHKPEEIFERAVKGMLPKGPLGYAMIK KMKVYAGSEHPHAAQQPQVLDI J:  MIQTETMLDVADNSGARRVQCIKVLGGSHRRYASVGDIIK VTVKEAIPRARVKKGDVMNAVVVRTKFGIRRPDGSVIRFD DNAAVILNNNKAPIATRIFGPVTRELRTEQFMKIISLAPE VL K:  MTLRLNELAPAEGAKREHRRLGRGIGSGVGKTGGRGIKGQ KSRKSGGVRPGFEGGQTAIYRRLPKFGFTSQIALKTAEVR LSELSKVEGDIVSLETLKAANVVRRDQIRARIVLSGEITR AFTVQGVALTKGAKAAIEAAGGKVEE L:  MLQPKRTKFRKVHKGRNTGLAHRGSTVSFGSIAIKATERG RMTARQIEAARRTISRRIKRGGKIFIRVFPDKPITEKPLE VRMGNGKGNVEYWVCEIKPGKILYEIEGVNEDLAREAFAL AAAKLPFKTTIVTRTVM M:  MRHRNSGVKLGRTSSHRKAMFENLANSLFEHELIKTTLPK AKELRRVAEPLITLAKNDTVANRRLAFARTRNAATVGKLF TVLGPRYKERNGGYLRVLKAGFRAGDAAPMAYVELVDRE N:  EKKQSRLRRAKSTRLHIRALGATRLCVNRTPRHIYAQVIS ADGGKVLAQASTLDASLRSGTTGNIEAATKVGALIAERAK AAGVTKVAFDRSGFKYHGRIKALADAAREGGLEF O:  SGKHPLVQAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRE RLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHS PVVAKIEVKRRGDVRRAKLYYLRDLSGKAARIREKLP P:  ARVKRGVVAHRRHKKILARAKGYYGARSRVYRVAFQAVIK AGQYAYRDRRQKKRQFRALWIARINAGARQNGLSYSRMID GLKKAQVIIDRRVLADIAMHDAVAFAALAEKAKGALA Q:  MYAVIQSGGKQHRVVEGETLKVELLKAESGATITFDDVLM VVNGDNIQIGAPVVAGAKVTAEVIGHGRHDKIRIIKMRRR KHYRKQQGHRQWFTELKITGISG R:  MEVTAKLRGAAISAQKARLVADLIRGKSVAHALNILNFSN KKAAVLVKKALESAIANAEHNNSLDVDDLKVSTIYVDEGM SLKRIMPRAKGRADRITKRTCHITVKVGV S:  NNERIYQVLKGPVFSEKAQVLGDTAGVQVFKVDINATKLE IKKAVEKLFGVEVVKVNTTITKGKTKRFGRTLGRRSDVKK AYVTLKAGQD T:  AKIKKGDQVIVIAGKEKGKQGTVLSVSEDRVKVEGLNLVK KHQKPNRVTGAEGGIVTQEASLHISNVAILNATTQKADRV GYQVIDGVKTRVYKSTGESV U:  ANFVLNAQARAEDKQGKGASRRLRRESLVPAIIYGGNAEP VAVTLELRELVKALESNVFFEEVVEIKVGDKVENVKIQAL QRHPAKNTPMHADFKRA V:  AGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEF HAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVETV W:  SKVCQVTGKRPVVGNNVSHANNKTKRRFEPNLHHHRFWLE SEKRFVRLRLTTKGMRIIDKLGIEKVVADLRAQGQKI X:  KTKDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSH EVQVARKTIARIKTLLTEKQGN Y:  MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDT PSNRGMINKVYYMVSVEE Z:  AVQQNRKSRSRRDMRRSHDALTENALTVDQATGETHRRHH VTKDGFYRGRQLFAK Description Functional site 1) chain 3 residue 11 type sequence C description binding site for residue ZN 3 101 source : AC1 2) chain 3 residue 13 type sequence S description binding site for residue ZN 3 101 source : AC1 3) chain 3 residue 14 type sequence C description binding site for residue ZN 3 101 source : AC1 4) chain 3 residue 27 type sequence C description binding site for residue ZN 3 101 source : AC1 5) chain 3 residue 33 type sequence H description binding site for residue ZN 3 101 source : AC1 6) chain C residue 219 type sequence T description binding site for residue MG source : AC2 7) chain C residue 53 type sequence H description binding site for residue MG source : AC3 8) chain C residue 233 type sequence G description binding site for residue MG C 301 source : AC4 9) chain J residue 60-86 type prosite sequence AVVVRTKFGIRRPDGSVIRFDDNAAVI description RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkfgirrp.DGsvirFddNaaVI source prosite : PS00049 10) chain F residue 57-73 type prosite sequence MQLIAGQKPVVTLARKS description RIBOSOMAL_L5 Ribosomal protein L5 signature. MqlIAGQkpVvTlARkS source prosite : PS00358 11) chain R residue 83-107 type prosite sequence KRIMPRAKGRADRITKRTCHITVKV description RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadritkrtCHITVkV source prosite : PS00464 12) chain D residue 104-127 type prosite sequence FTVGQIVDVTGQSKGKGFQGGVKR description RIBOSOMAL_L3 Ribosomal protein L3 signature. FtvgqivDvtGqSkGKGfqGgvkR source prosite : PS00474 13) chain K residue 111-141 type prosite sequence RIVLSGEITRAFTVQGVALTKGAKAAIEAAG description RIBOSOMAL_L15 Ribosomal protein L15 signature. RIVLsGeItra..FtVqgvaLTkgAkaaIeaaG source prosite : PS00475 14) chain G residue 154-162 type prosite sequence PEPYKGKGV description RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV source prosite : PS00525 15) chain 0 residue 17-36 type prosite sequence YTTTKNKRTMPEKMEIKKFD description RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNkrtmPekMEikKFD source prosite : PS00582 16) chain H residue 13-40 type prosite sequence GKLGDKVSVKAGYGRNFLIPQGKAVAAT description RIBOSOMAL_L9 Ribosomal protein L9 signature. GklGdkvsVkaGYgrNFLipqgkAvaaT source prosite : PS00651 17) chain L residue 82-93 type prosite sequence RMGNGKGNVEYW description RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGnGKGnveyW source prosite : PS00701 18) chain 1 residue 2-21 type prosite sequence KRTFQPSELKRKRVHGFRAR description RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpselkRkrvh.GFraR source prosite : PS00784 19) chain 3 residue 11-37 type prosite sequence CGSCKVIRRNGVIRVICSAEPRHKQRQ description RIBOSOMAL_L36 Ribosomal protein L36 signature. CgsCkvIrRngvIrViCsaepRHkQrQ source prosite : PS00828 20) chain V residue 34-48 type prosite sequence GNIIVRQRGTEFHAG description RIBOSOMAL_L27 Ribosomal protein L27 signature. GnIIvRQRGtefhaG source prosite : PS00831 21) chain 2 residue 5-30 type prosite sequence KTRRGAAKRFKATANGFKRKQAFKRH description RIBOSOMAL_L35 Ribosomal protein L35 signature. KTRrGAaKRFkatangfkrkqafk..RH source prosite : PS00936 22) chain P residue 54-70 type prosite sequence KRQFRALWIARINAGAR description RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRaLWIARINagaR source prosite : PS00937 23) chain O residue 89-104 type prosite sequence VKRRGDVRRAKLYYLR description RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGDVR.RAKLYYLR source prosite : PS01015 24) chain T residue 7-24 type prosite sequence GDQVIVIAGKEKGKQGTV description RIBOSOMAL_L24 Ribosomal protein L24 signature. GDqViVIaGkeKGkq.GtV source prosite : PS01108 25) chain M residue 34-56 type prosite sequence IKTTLPKAKELRRVAEPLITLAK description RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvaEpLITlAK source prosite : PS01167 26) chain Q residue 72-94 type prosite sequence IRIIKMRRRKHYRKQQGHRQWFT description RIBOSOMAL_L21 Ribosomal protein L21 signature. IriiKmrrRKhyrkqqGHRQwfT source prosite : PS01169 27) chain D residue 153 type MOD_RES sequence Q description N5-methylglutamine => ECO:0000255|HAMAP-Rule:MF_01325 source Swiss-Prot : SWS_FT_FI1

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