eF-site ID 6v39-0123CDEFGHIJKLMNOPQRSTUVWXYZbcdefghijklmnopqrstu PDB Code 6v39 Chain 0, 1, 2, 3, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u Title Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA Classification RIBOSOME Compound 50S ribosomal protein L33 Source ORGANISM_SCIENTIFIC: Acinetobacter sp. CIP 51.11; Sequence 0:  MRDKIRLVSSAGTGYFYTTTKNKRTMPEKMEIKKFDPKIR QHVIFKEAKIK 1:  MKRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRH SLTV 2:  AKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIR QLRGCVMVHVSDVASVRRMCPYI 3:  MKVQASVKKICGSCKVIRRNGVIRVICSAEPRHKQRQG C:  QKCKPTSPGRRFVEKVVHDHLHKGAPYAPLVEAKKRTGGR NNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEY DPNRTAHIALLKYADGERRYIIAPKGLRAGDKVQSGNDAP IRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQ LLGRDGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLR SLGKAGAARWRGVRPTVRGMAMNPIDHPHGGGEGRNKGIQ PVSPWGQKAKGYKTRTNKRTTKMIIRDRRV D:  AIGLVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTL ETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVK EFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGF QGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKG KKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATG GDVIVRPTIKA E:  SEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSG GGKKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQ KVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPKTKEL LAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATA IDPVSLIAFDKVVMSVAAAKKIEVEL F:  RLKARYNDELKAKLQEELSIKNVMEIPRITKITLNMGVGA AATDKKLLDGAVADMQLIAGQKPVVTLARKSIAGFKIRDG WPIGCKVTLRGDQMYEFLDRLISIAIPRIRDFRGFSAKSF DGRGNYSMGLKEQIVFPEIDFDKIDRIRGMDITITTTART DDEGRALMRAFGFPF G:  SRVAKAPVTVPNGVTVTQNGRQVEVKGSKGTLSFNLHALV ELKQEEGKLQLAPAKESKDAWMQAGTARAVLNNLVKGVSE GFERKLQLVGVGYKAAVKGTVVNLNLGYSHPIDYALPEGV TAETPTATEIILKSANKQLLGQVAAEIRAYRSPEPYKGKG VRYSDEVILRKEAK H:  MDVILLQRIKNLGKLGDKVSVKAGYGRNFLIPQGKAVAAT EANTAAFEARRAELEKQEAE I:  MKTLSAKPAEVQHDWFVVDATGKTLGRLATEIARRLRGKH KTSYTPHVDTGDYIIVINAEQVQVTGNKALDKKYYRHTEF PGGLKETNFEKLVAHKPEEIFERAVKGMLPKGPLGYAMIK KMKVYAGSEHPHAAQQPQVLDI J:  MIQTETMLDVADNSGARRVQCIKVLGGSHRRYASVGDIIK VTVKEAIPRARVKKGDVMNAVVVRTKFGIRRPDGSVIRFD DNAAVILNNNKAPIATRIFGPVTRELRTEQFMKIISLAPE VL K:  MTLRLNELAPAEGAKREHRRLGRGIGSGVGKTGGRGIKGQ KSRKSGGVRPGFEGGQTAIYRRLPKFGFTSQIALKTAEVR LSELSKVEGDIVSLETLKAANVVRRDQIRARIVLSGEITR AFTVQGVALTKGAKAAIEAAGGKVEE L:  MLQPKRTKFRKVHKGRNTGLAHRGSTVSFGSIAIKATERG RMTARQIEAARRTISRRIKRGGKIFIRVFPDKPITEKPLE VRMGNGKGNVEYWVCEIKPGKILYEIEGVNEDLAREAFAL AAAKLPFKTTIVTRTVM M:  MRHRNSGVKLGRTSSHRKAMFENLANSLFEHELIKTTLPK AKELRRVAEPLITLAKNDTVANRRLAFARTRNAATVGKLF TVLGPRYKERNGGYLRVLKAGFRAGDAAPMAYVELVDRE N:  EKKQSRLRRAKSTRLHIRALGATRLCVNRTPRHIYAQVIS ADGGKVLAQASTLDASLRSGTTGNIEAATKVGALIAERAK AAGVTKVAFDRSGFKYHGRIKALADAAREGGLEF O:  SGKHPLVQAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRE RLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHS PVVAKIEVKRRGDVRRAKLYYLRDLSGKAARIREKLP P:  ARVKRGVVAHRRHKKILARAKGYYGARSRVYRVAFQAVIK AGQYAYRDRRQKKRQFRALWIARINAGARQNGLSYSRMID GLKKAQVIIDRRVLADIAMHDAVAFAALAEKAKGALA Q:  MYAVIQSGGKQHRVVEGETLKVELLKAESGATITFDDVLM VVNGDNIQIGAPVVAGAKVTAEVIGHGRHDKIRIIKMRRR KHYRKQQGHRQWFTELKITGISG R:  MEVTAKLRGAAISAQKARLVADLIRGKSVAHALNILNFSN KKAAVLVKKALESAIANAEHNNSLDVDDLKVSTIYVDEGM SLKRIMPRAKGRADRITKRTCHITVKVGV S:  NNERIYQVLKGPVFSEKAQVLGDTAGVQVFKVDINATKLE IKKAVEKLFGVEVVKVNTTITKGKTKRFGRTLGRRSDVKK AYVTLKAGQD T:  AKIKKGDQVIVIAGKEKGKQGTVLSVSEDRVKVEGLNLVK KHQKPNRVTGAEGGIVTQEASLHISNVAILNATTQKADRV GYQVIDGVKTRVYKSTGESV U:  ANFVLNAQARAEDKQGKGASRRLRRESLVPAIIYGGNAEP VAVTLELRELVKALESNVFFEEVVEIKVGDKVENVKIQAL QRHPAKNTPMHADFKRA V:  AGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEF HAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVETV W:  SKVCQVTGKRPVVGNNVSHANNKTKRRFEPNLHHHRFWLE SEKRFVRLRLTTKGMRIIDKLGIEKVVADLRAQGQKI X:  KTKDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSH EVQVARKTIARIKTLLTEKQGN Y:  MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDT PSNRGMINKVYYMVSVEE Z:  AVQQNRKSRSRRDMRRSHDALTENALTVDQATGETHRRHH VTKDGFYRGRQLFAK b:  YNVSMRDLLQAGAHFGHQTRFWNPKMRQYIFGARNKIHII NLEHTVPALNDALNFANQLASKKNKVLFVGTKRAASNIIR EQAQRAGQPYVDHRWLGGMLTNWKTLRQSINRLKDLQTQS QDGTFAKLTKREALERTREMEKLERSLGGVKNMGGLPDAL FVIDVDHEAIAIKEAKNLGIPVIGIVDTNSNPDNVDYVIP GNDDAIRAVTLYASAMADAILAGKE c:  GQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVRE FLTKKLKNAMVSNILIERPSGAAKVTISTARPGIVIGKKG EDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAIA SQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAE IARTEWYREGRVPLHTLRADIDYATMRAETTYGTIGVKVW IFRGEILGGMKQVMN d:  ARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQ HGQARGGKQSEYSLQLREKQKVRRIYGVLERQFSNYYKEA ARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS HRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAI ELAAQRGIPAWIEVDHSKLEGTFKAAPDRSDLPAEINESL IVELYSK e:  LVEKLVAVDRVAKVVKGGRIFSFTALTVVGDGNGRVGFGR GKAREVPAAISKALEAARRNMITVDLAGTTLQHPVNARHG ASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGS TNAANVVNATFKGLRDMTSPEKVAAKRGKSVEEIQ f:  MRHYEIVLLVHPDQSDQVVGMVERYISQIKEADGQIHRLE DWGRRQLAYPINKIHKAHYILMNVECGQSTLDELEELFRY NDAIIRNLIIRREH g:  PRRRVVAAREILPDPKFSSQTIAKFMNHVMQDGKKSIAES IVYGALERVQEKNKVDPVEFFETTLEKVRPMVEVKARRVG GATYQVPMEVRPSRRTALAMRWLVDAAAKRSEKTMALRLA GELLDAAEGKGAAIKKREDVH h:  SMQDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQ QEGYISNVEVAQEETKSTLTITLKYFEGKPVIEMVKRVSR PGLRQYRGKDKLPSVKQGLGIAIVSTSKGIMTDRAARAAG IGGEVIAFVS i:  ATNYGTGRRKTATARVFLSAGTGKLVINNRTLEQYFGRET ARMVVRQPLELLEATEKYDLYITVKGGGIGGQAGAIRHGI TRALIAADETLKPVLRQAGFVTRDAREVERKKLGLRKARK RPQFSKR j:  NQRIRIRLKSFDHRLIDQSAQEIVETAKRTGAQVCGPIPM PTRIERFNVLTSPHVNKDARDQYEIRTYKRLIDIVQPTDK TVDALMKLDLAAGVDVQIAL k:  TRTVSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGF RGSRKSTPFAAQVAAEVAGKAALDYGLKNLDVLVKGPGPG RESAVRALGAVGYKINSITDVTPIPHNGCRPPKKRRV l:  ATTNQLIRKGRTTLVEKSKVPALKACPQRRGVCTRVYTTT PKKPNSAMRKVCRVRLTSGFEVSSYIGGEGHNLQEHSVVL IRGGRVKDLPGVRYHTVRGSLDCAGVKDRNQSRSKYGAKR PK m:  ARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILAAVGITE TTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLM DLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPI n:  AKKGMINRELKREKTVAKYAAKRAELKATIANVNASDEER FEAMLKLQALPRNASPVRLRNRCGLTGRPHGYFRKFGLSR NKLRDTVMQGDVPGVVKASW o:  ALTNADRAEIIAKFARAENDTGSPEVQVALLTAQINDLQG HFKAHKHDHHSRRGLIRMVNQRRKLLDYLNGKDHERYTAL IGALGLRR p:  MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFN PTAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQAKK ATA q:  KTVRTLTGKVVSDKMDKSIVVLIERRVQHPLYGKSIRRST KLHAHDENNVAKIGDVVTIKESRPISKTKAWTLVEVVEAA r:  YIDYKDIDTLKQYITENGKIVPSRITGTKARYQRQLALAI KQARYLSLIPYTD s:  PRSLKKGPFVDAHLFAKVEAAVASNSRKPIKTWSRRSMIL PDFVGLTISVHNGRNHVPVIVTEHMVGHKLGEFAPTRTYR GH t:  NSAQAKKRARQNVKARKHNASLRSMVRTYIKRTLSAIAGG DYAVATEAYKKAVPVIDRMADKGIIHKNKAARHKSRLNAQ VKALA u:  KREFYEKPTQERKRKKAAAVK Description (1)  Ribosome Functional site 1) chain 3 residue 11 type sequence C description binding site for residue ZN 3 101 source : AC1 2) chain 3 residue 13 type sequence S description binding site for residue ZN 3 101 source : AC1 3) chain 3 residue 14 type sequence C description binding site for residue ZN 3 101 source : AC1 4) chain 3 residue 27 type sequence C description binding site for residue ZN 3 101 source : AC1 5) chain 3 residue 30 type sequence E description binding site for residue ZN 3 101 source : AC1 6) chain 3 residue 33 type sequence H description binding site for residue ZN 3 101 source : AC1 7) chain C residue 233 type sequence G description binding site for residue MG source : AC3 8) chain C residue 234 type sequence G description binding site for residue MG source : AC3 9) chain C residue 53 type sequence H description binding site for residue MG source : AC4 10) chain i residue 125 type sequence F description binding site for residues 2MG sN 963 and 5MC sN 964 source : AC5 11) chain i residue 127 type sequence K description binding site for residues 2MG sN 963 and 5MC sN 964 source : AC5 12) chain F residue 80 type sequence R description binding site for residues 5MU v 55 and PSU v 56 source : AC6 13) chain V residue 34-48 type prosite sequence GNIIVRQRGTEFHAG description RIBOSOMAL_L27 Ribosomal protein L27 signature. GnIIvRQRGtefhaG source prosite : PS00831 14) chain f residue 43-52 type prosite sequence GRRQLAYPIN description RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN source prosite : PS01048 15) chain k residue 96-118 type prosite sequence VRALGAVGYKINSITDVTPIPHN description RIBOSOMAL_S11 Ribosomal protein S11 signature. VrALgaV.GYkInsitDvTPiPHN source prosite : PS00054 16) chain M residue 34-56 type prosite sequence IKTTLPKAKELRRVAEPLITLAK description RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvaEpLITlAK source prosite : PS01167 17) chain P residue 54-70 type prosite sequence KRQFRALWIARINAGAR description RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRaLWIARINagaR source prosite : PS00937 18) chain K residue 111-141 type prosite sequence RIVLSGEITRAFTVQGVALTKGAKAAIEAAG description RIBOSOMAL_L15 Ribosomal protein L15 signature. RIVLsGeItra..FtVqgvaLTkgAkaaIeaaG source prosite : PS00475 19) chain 2 residue 5-30 type prosite sequence KTRRGAAKRFKATANGFKRKQAFKRH description RIBOSOMAL_L35 Ribosomal protein L35 signature. KTRrGAaKRFkatangfkrkqafk..RH source prosite : PS00936 20) chain Q residue 72-94 type prosite sequence IRIIKMRRRKHYRKQQGHRQWFT description RIBOSOMAL_L21 Ribosomal protein L21 signature. IriiKmrrRKhyrkqqGHRQwfT source prosite : PS01169 21) chain G residue 154-162 type prosite sequence PEPYKGKGV description RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV source prosite : PS00525 22) chain D residue 104-127 type prosite sequence FTVGQIVDVTGQSKGKGFQGGVKR description RIBOSOMAL_L3 Ribosomal protein L3 signature. FtvgqivDvtGqSkGKGfqGgvkR source prosite : PS00474 23) chain R residue 83-107 type prosite sequence KRIMPRAKGRADRITKRTCHITVKV description RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadritkrtCHITVkV source prosite : PS00464 24) chain L residue 82-93 type prosite sequence RMGNGKGNVEYW description RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGnGKGnveyW source prosite : PS00701 25) chain o residue 39-69 type prosite sequence LQGHFKAHKHDHHSRRGLIRMVNQRRKLLDY description RIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFkahKhDhhSrrgLirMvnqrrkLldY source prosite : PS00362 26) chain 3 residue 11-37 type prosite sequence CGSCKVIRRNGVIRVICSAEPRHKQRQ description RIBOSOMAL_L36 Ribosomal protein L36 signature. CgsCkvIrRngvIrViCsaepRHkQrQ source prosite : PS00828 27) chain j residue 29-44 type prosite sequence AKRTGAQVCGPIPMPT description RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvcGPIpMPT source prosite : PS00361 28) chain 0 residue 17-36 type prosite sequence YTTTKNKRTMPEKMEIKKFD description RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNkrtmPekMEikKFD source prosite : PS00582 29) chain e residue 27-59 type prosite sequence GRIFSFTALTVVGDGNGRVGFGRGKAREVPAAI description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGrgkar.EVpa.AI source prosite : PS00585 30) chain q residue 57-69 type prosite sequence GDVVTIKESRPIS description RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVtIkEsRPIS source prosite : PS00056 31) chain m residue 87-100 type prosite sequence RGLRHRRSLPVRGQ description RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrSlpVRGQ source prosite : PS00646 32) chain s residue 53-77 type prosite sequence NGRNHVPVIVTEHMVGHKLGEFAPT description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRnhvpviVtehmVGhkLGEFapT source prosite : PS00323 33) chain b residue 8-19 type prosite sequence MRDLLQAGAHFG description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDLLQAGAHFG source prosite : PS00962 34) chain b residue 160-184 type prosite sequence PDALFVIDVDHEAIAIKEAKNLGIP description RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDvdhEaiaIkEaknlGIP source prosite : PS00963 35) chain h residue 101-118 type prosite sequence GIAIVSTSKGIMTDRAAR description RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaIVSTSkGIMtdraAR source prosite : PS00053 36) chain J residue 60-86 type prosite sequence AVVVRTKFGIRRPDGSVIRFDDNAAVI description RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkfgirrp.DGsvirFddNaaVI source prosite : PS00049 37) chain r residue 21-44 type prosite sequence IDYKDIDTLKQYITENGKIVPSRI description RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IdtLkqYITEn.GKIvpsRI source prosite : PS00057 38) chain p residue 20-29 type prosite sequence VVIRLARGGA description RIBOSOMAL_S16 Ribosomal protein S16 signature. VvIRLARGGA source prosite : PS00732 39) chain H residue 13-40 type prosite sequence GKLGDKVSVKAGYGRNFLIPQGKAVAAT description RIBOSOMAL_L9 Ribosomal protein L9 signature. GklGdkvsVkaGYgrNFLipqgkAvaaT source prosite : PS00651 40) chain F residue 57-73 type prosite sequence MQLIAGQKPVVTLARKS description RIBOSOMAL_L5 Ribosomal protein L5 signature. MqlIAGQkpVvTlARkS source prosite : PS00358 41) chain d residue 96-120 type prosite sequence LESRLDNVVYRMGFGSTRAEARQLV description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRmgfGsTraeARqLV source prosite : PS00632 42) chain O residue 89-104 type prosite sequence VKRRGDVRRAKLYYLR description RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGDVR.RAKLYYLR source prosite : PS01015 43) chain l residue 43-50 type prosite sequence KKPNSAMR description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAmR source prosite : PS00055 44) chain i residue 67-85 type prosite sequence GGGIGGQAGAIRHGITRAL description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGigGQagAirhGiTRAL source prosite : PS00360 45) chain c residue 163-197 type prosite sequence ARTEWYREGRVPLHTLRADIDYATMRAETTYGTIG description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyatmraeTtyGtiG source prosite : PS00548 46) chain 1 residue 2-21 type prosite sequence KRTFQPSELKRKRVHGFRAR description RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpselkRkrvh.GFraR source prosite : PS00784 47) chain n residue 63-85 type prosite sequence RCGLTGRPHGYFRKFGLSRNKLR description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CgltgrphgyfrkFGLSRnKLR source prosite : PS00527 48) chain T residue 7-24 type prosite sequence GDQVIVIAGKEKGKQGTV description RIBOSOMAL_L24 Ribosomal protein L24 signature. GDqViVIaGkeKGkq.GtV source prosite : PS01108 49) chain g residue 20-46 type prosite sequence SQTIAKFMNHVMQDGKKSIAESIVYGA description RIBOSOMAL_S7 Ribosomal protein S7 signature. SqTiakFMnhvmqdGKKsiaesIVygA source prosite : PS00052 50) chain l residue 89 type MOD_RES sequence D description 3-methylthioaspartic acid => ECO:0000250 source Swiss-Prot : SWS_FT_FI1

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