eF-site ID 6spe-bcdefghijklmnopqrstu
PDB Code 6spe
Chain b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u

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Title Pseudomonas aeruginosa 30s ribosome from a clinical isolate
Classification RIBOSOME
Compound 16S ribosomal RNA
Source ORGANISM_SCIENTIFIC: Pseudomonas aeruginosa;
Sequence b:  QVNMRDMLKAGVHFGHQTRYWNPKMGKFIFGARNKIHIIN
LEKTLPMFNEALTFVERLAAGKNKILFVGTKRSAGKIVRE
EAARCGMPYVDHRWLGGMLTNYKTIRQSIKRLRDLETQSQ
DGTKKEALMRSRDLEKLERSLGGIKDMGGLPDALFVIDVD
HERIAITEANKLGIPVIGVVDTNSSPEGVDYVIPGNDDAI
RAVQLYLNSMAEAVIRGKQGAATSADEFVEEAPA
c:  QKVHPNGIRLGIVKEHTSVWYADRKNYADYLFADLKVREY
LQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGE
DVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSVAQ
QLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEI
ARTEWYREGRVPLHTLRADIDYATYEAHTTYGVIGVKVWI
FKGEV
d:  ARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQH
GQRRGRLSDYGLQLREKQKVRRIYGVLERQFRGYYQEASR
RKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVSHK
AITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALEL
CGQRGRVEWVEVDLDKKAGTFKSAPARSDLSADINENLIV
ELYSK
e:  GYIEKLVQVNRVAKTVKGGRIFAFTALTVVGDGKGRVGFG
RGKAREVPAAIQKAMEAARRNMIQVDLNGTTLQYPTKSAH
GASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYG
STNPVNVVYATFKGLKNMQAPEAVAAKRGKSVEEIL
f:  RHYEIVFLVHPDQSEQVGGMVERYTKAIEEDGGKIHRLED
WGRRQLAYAINNVHKAHYVLMNVECSAKALAELEDNFRYN
DAVIRNLVMRRDEAVTEQSEMLKAE
g:  RRRVAAKREVLADPKYGSQILAKFMNHVMESGKKAVAERI
VYGALDKVKERGKADPLETFEKALDAIAPLVEVKSRRVGG
ATYQVPVEVRPSRRNALAMRWLVDFARKRGEKSMALRLAG
ELLDAAEGKGAAVKKREDVHRMAEANKAFSHYRF
h:  SMQDPLADMLTRIRNAQMAEKTVVSMPSSKLKAAVAKVLK
DEGYIADFQISSEVKPQLSIELKYFEGKPVIEEVKRISRP
GLRQYKSVEQLPKVRGGLGVSIVSTNKGVMTDRAARAAGV
GGEVLCTVF
i:  ATQNYGTGRRKTATARVFLRPGTGKISINNRGLDQFFGRE
TARMVVRQPLELTETVEKFDIFVTVVGGGVSGQAGAIRHG
ITRALIEYDETLRSSLRKAGYVTRDAREVERKKVGLRKAR
KRPQYS
j:  IRLKAFDHRLIDQSTQEIVETAKRTGAQVRGPIPLPTRKE
RFTVLISPHVNKDARDQYEIRTHKRVLDIVQPTDKTVDAL
MKLDLAAGVEVQISLG
k:  KTVVDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFR
GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGR
ESAVRALNACGYKIASITDVTPIPHNGCRPPKKRR
l:  ATINQLVRKPRKRMVDKSDVPALQNCPQRRGVCTRVYTTT
PKKPNSALRKVCRVRLTNGFEVSSYIGGEGHNLQEHSVVL
IRGGRVKDLPGVRYHTVRGSLDTSGVKDRKQGRSKYGAKR
P
m:  RIAGVNIPDNKHTVISLTYIYGVGRTTAQSICAATGVNPA
AKIKDLSDEQIDQLRNEVAKITTEGDLRREINMNIKRLMD
LGCYRGLRHRRGLPVRGQRTKTNARTRKGP
n:  KESMKNRELKRQLTVAKYAKKRAELKAIIANPNSSAEERW
NAQVALQKQPRDASASRLRNRCRLTGRPHGFYRKFGLSRN
KLREAAMRGDVPGLVKAS
o:  LSVEEKAQIVNEYKQAEGDTGSPEVQVALLSANINKLQDH
FKANGKDHHSRRGLIRMVNQRRKLLDYLKGKDVSRYTALI
GRLGLR
p:  MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERIGFFN
PVATGGEVRLSVDQERATYWLGQGAQPSERVAQLLKDA
q:  RTLTGRVVSDKMDKTVTVLIERRVKHPIYGKYVKRSTKLH
AHDESNQCRIGDLVTIRETRPLAKTKAWTLVDIVER
r:  FFRRRRFCRFTAEGVKEIDYKDLNTLKAYVSETGKIVPSR
ITGTKAKYQRQLATAIKRARYLALLPYTDSH
s:  PRSLKKGPFIDLHLLKKVEVAVEKNDRKPIKTWSRRSMIL
PHMVGLTIAVHNGRQHVPVLVNEDMVGHKLGEFAATRTYR
t:  NTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAK
DLEKAQAAFTAAVPVIDRMADKGIIHKNKAARHKSRLSGH
IKALS
u:  KVKEEPFDVALRRFKRSCEKAGALAEVRSREFYEKPTAER
KRKAAAAVKRHAKKVQREQRRR
Description (1)  30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21/RNA Complex


Functional site

1) chain s
residue 53-77
type prosite
sequence NGRQHVPVLVNEDMVGHKLGEFAAT
description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvlVnedmVGhkLGEFaaT
source prosite : PS00323

2) chain j
residue 29-44
type prosite
sequence AKRTGAQVRGPIPLPT
description RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT
source prosite : PS00361

3) chain d
residue 94-118
type prosite
sequence LECRLDNVVYRMGFGSTRSESRQLV
description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEcRLdnvVYRmgfGsTrseSRqLV
source prosite : PS00632

4) chain l
residue 43-50
type prosite
sequence KKPNSALR
description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
source prosite : PS00055

5) chain i
residue 69-87
type prosite
sequence GGGVSGQAGAIRHGITRAL
description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGvsGQagAirhGiTRAL
source prosite : PS00360

6) chain e
residue 29-61
type prosite
sequence GRIFAFTALTVVGDGKGRVGFGRGKAREVPAAI
description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifaFtAltVVGDgk.GrVGfGrgkar.EVpa.AI
source prosite : PS00585

7) chain k
residue 97-119
type prosite
sequence VRALNACGYKIASITDVTPIPHN
description RIBOSOMAL_S11 Ribosomal protein S11 signature. VrALn.AcGYkIasitDvTPiPHN
source prosite : PS00054

8) chain h
residue 100-117
type prosite
sequence GVSIVSTNKGVMTDRAAR
description RIBOSOMAL_S8 Ribosomal protein S8 signature. GvsIVSTNkGVMtdraAR
source prosite : PS00053

9) chain g
residue 20-46
type prosite
sequence SQILAKFMNHVMESGKKAVAERIVYGA
description RIBOSOMAL_S7 Ribosomal protein S7 signature. SqIlakFMnhvmesGKKavaerIVygA
source prosite : PS00052

10) chain b
residue 6-17
type prosite
sequence MRDMLKAGVHFG
description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDMLKAGVHFG
source prosite : PS00962

11) chain b
residue 158-182
type prosite
sequence PDALFVIDVDHERIAITEANKLGIP
description RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDvdhEriaItEanklGIP
source prosite : PS00963

12) chain o
residue 39-69
type prosite
sequence LQDHFKANGKDHHSRRGLIRMVNQRRKLLDY
description RIBOSOMAL_S15 Ribosomal protein S15 signature. LqdHFkanGkDhhSrrgLirMvnqrrkLldY
source prosite : PS00362

13) chain f
residue 43-52
type prosite
sequence GRRQLAYAIN
description RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYaIN
source prosite : PS01048

14) chain r
residue 21-44
type prosite
sequence IDYKDLNTLKAYVSETGKIVPSRI
description RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.LntLkaYVSEt.GKIvpsRI
source prosite : PS00057

15) chain m
residue 87-100
type prosite
sequence RGLRHRRGLPVRGQ
description RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
source prosite : PS00646

16) chain u
residue 13-25
type prosite
sequence DVALRRFKRSCEK
description RIBOSOMAL_S21 Ribosomal protein S21 signature. DvALRRFKRsceK
source prosite : PS01181

17) chain n
residue 63-85
type prosite
sequence RCRLTGRPHGFYRKFGLSRNKLR
description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrltgrphgfyrkFGLSRnKLR
source prosite : PS00527

18) chain c
residue 163-197
type prosite
sequence ARTEWYREGRVPLHTLRADIDYATYEAHTTYGVIG
description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyatyeahTtyGviG
source prosite : PS00548


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