eF-site ID 6spd-123456CDEFGHIJKLMNOPQRSTUVWXYZ PDB Code 6spd Chain 1, 2, 3, 4, 5, 6, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z click to enlarge Title Pseudomonas aeruginosa 50s ribosome from a clinical isolate Classification RIBOSOME Compound 23S ribosomal RNA Source ORGANISM_SCIENTIFIC: Pseudomonas aeruginosa; Sequence 1:  KADIHPTYEAIEATCSCGNVIKTRSTLCKPI 2:  AVQQNKKSRSARDMRRSHDALESNALSVEKSTGEVHLRHH VSPDGFYRGRKVV 3:  RELIRLVSSAGTGHFYTTDKNKRTKPEKIEIKKYDPVVRQ HVIYKEAKIK 4:  MKRTFQPSTLKRARVHGFRARMATKNGRQVLSRRRAKGRK RLTV 5:  PKMKTKSGAAKRFKKTAGGLKHKHAFKSHILTKMTTKRKR QLRGTSMLNKSDVARVERSLRLR 6:  MKVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQRQG C:  IVKCKPTSAGRRFVVKVVNQELHKGAPYAPLLEKKSKSGG RNNNGRITTRHIGGGHKQHYRLVDFRRNKDGIPAIVERVE YDPNRTAHIALLKYADGERRYIIAPKGVAAGDQLISGIGA PIKAGNSMPLRNIPVGSTVHGIELKPGKGAQIARSAGASA QLVAREGAYVTLRLRSGEMRKVLAECRATLGEVSNSEHSL RSLGKAGATRWRGVRPTVRGVAMNPVDHPHGGGEGRTSAG RHPVSPWGLQTKGKKTRSNKRTDNMIVRRRK D:  IGVVGRKCGMTRIFTEEGVSIPVTVIEVEPNRVTQFKTEE TDGYRAVQVTAGERRASRVTKAQAGHFAKANVAAGRGVWE FRLGEEQYAAGDQITVDLFQAGQMVDVTGESKGKGFAGTI KRWNFRGQDNTHGNSVSHRVPGSIGQCQTPGRVFKGKKMS GHLGAERVTVQSLEIVRVDAERNLLLVKGAVPGATGGDVI VRPAAKA E:  QLNVNGAQAIEVSERTFGGEFNETLVHQAVVAYMAGGRQG SKAQKTRSEVSGGGKKPWRQKGTGRARAGTIRSPIWRGGG TTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVVA DFAVDAPKTKGLVAKLDTLGLKDVLIVTDGVDENLYLAAR NLAHVDVRDVQGSDPVSLIAYDKVLVTVSAVKKFEELLG F:  RLKELYRKEIAPKLKEELQLANVMEVPRVTKITLNMGLGE AVGDKKIIENAVADLEKITGQKPVVTYARKSIAGFKIREG WPIGVKVTLRSDRMYEFLDRLLSISLPRVRDFRGLNAKSF DGRGNYSMGVKEQIIFPEIDYDKIDALRGLDITLTTTART DDEGRALLRAFKFPF G:  SRVAKNPVKLPAGVEIKLAGQQLSIKGAKGALELKVHPSV EVIQDSGELRFAARNGDQQTRAMAGTTRALVNNMVVGVSQ GFERKLQLVGVGYKAQAKGQVLSLSLGFSHPVDYELPAGI VAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKG VRYADEVVRRKEA H:  EVILLEKVANLGNLGDKVNIKGGYARNFLLPQGKATVATA ENVAAFEARRAELEKAAAEKKAAAEARAAQLSELVVTLGA HAGDEGKLFGSIGTRDIAEAVSAAGYPLEKAEVRLPNGAL RNTGEFDVAVHLHTDVETTLKLIIVAE I:  KKIQAYIKLQVKAGQANPSPPVGPALGQHGVNIMEFCKAF NAKTQGQEPGLPTPVIITVYSDRSFTFETKSTPAAVLLKK AAGITSGSARPNSQKVGTVTRAQLEEIAKTKQADLTAADL DAAVRTIAGSARSMGLNVEG J:  KTYTAKPETVQRDWFVVDAAGQTLGRLATEIARRLRGKHK PEYTPHVDTGDYIVVINAEQVRVTGAKTTDKMYYHHSGFP GGIKSINFEKLIAKAPERVIETAVKGMLPKNPLGRDMYRK LKVYKGASHPHTAQQPQELKI K:  MIQTQSMLDVADNSGARRVMCIKVLGGSHRRYAGIGDIIK VTVKEAIPRGKVKKGQVMTAVVVRTKHGVRRTDGSIIRFD GNAAVLLNNKQEPIGTRIFGPVTRELRTEKFMKIVSLAPE L:  QLNDLRSAPGARREKHRPGRGIGSGLGKTGGRGHKGLTSR SGGKVAPGFEGGQQPLHRRLPKFGFVSLKAMDRAEVRTSE LAKVEGDVVSLQTLKDANLINQHVQRVKVMLSGEVGRAVT LKGIAATKGARAAIEAAGGKFED M:  MLQPKRTKFRKQMTGHNRGLAHRGSKVSFGEYALKATSRG RLTARQIESARRALTRHVKRGGKIWIRVFPDKPVTKKPLE VRMGKGKGGVEYWVAQIQPGKVLYEIEGVSEELAREAFAL AAAKLPLATSFVKRT N:  MRHRKSGRHLSRTSAHRKAMFQNMAVSLFEHELIKTTLPK AKELRRVAEPLITLAKEDSVANRRLAFDRTRSKAAVGKLF NDLGKRYANRPGGYLRILKCGFRAGDNAPMAYVELVDR O:  SVKKETRLRRARKARLKMRELETVRLCVYRSSQHIYAQVI AADGGKVLASASTLDKDLREGATGNIDAAKKVGQLVAERA KAAGVTQVAFDRSGFKYHGRVKALADAAREGGLEF P:  KIIQQIEAEQMNKEIPAFAPGDTVIVQVKVKEGDRQRLQA FEGVVIAKRNRGLNSAFTVRKISNGVGVERTFQTYSPIVD SLSVKRRGDVRKAKLYYLRALSGKAARIKEKLV Q:  ARVKRGVIARRRHKKILKLAKGYYGARSRVFRVAKQAVIK AGQYAYRDRRQRKRQFRALWIARINAGARQNGLSYSRLIA GLKKAAIEIDRKVLADLAVNEKAAFTAIVEKAKASLA R:  MYAVIVTGGKQHKVTEGEFLKVEKLDVATGEAIDFDRVLL VANGEDVKIGLPVVEGAKVTAEVVSHGRHDKVRIIKFRRR KHHMKRQGHRQWFTEIKITGIQA S:  EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSK KAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRS LKRIMPRAKGRADRIVKRSCHITVKVADK T:  NQERVFKVLLGPHISEKATGLADGKSQFVFKVATDATKLE IKKAVESLFSVKVQRVTTLNVKGKTKRTARGLGKRNDWKK AYIALQPGQDLD U:  MQKIRRDDEVIVIAGKDKGKRGKVLKVLADDRLVVGGVNL IKRHTKPNPMLGQQGGIVEKEAPLHVSNVAIFNTETSKAD RVGFKVEDGKKIRVFKSTQKPVQ V:  FIVNAQVRSDLGKGASRRLRRNAGLVPAVVYGGDKEPQSV TLELREIAKLLENEAAFSHVIALNVGGVKETVLIKALQRH PAKGFVMHADFLRVVADHKLTAHVPLHFINEEVAVGVKQA GGEISHTISEVEVSCLPKDLPEFIEVDMAKVELGQIVHLS DLKAPKGVELVQLAHGNDLAVANIHASR W:  TRNGRDSESKRLGVKLFGGQAVKAGNILVRLRGTKFHAGY GVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSIVAA X:  SRVCQVTGKGPVTGNNISHAHNKTRRRFLPNLQHHRFWVE SEKRFVRLRVSAKGMRIIDKRGIEAVLADLRARGEKF Y:  KANELREEKSGPVTGNNISHLLRDQFNLRMQKATGQLGQS HLLSQVKRDIARVKTVLNQQ Z:  ATVKVTLVKSLNGRLANHKACVKGLGLRRINHTVEVQDTP ENRGMINKAYYLLRVEG Description (1)  50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L11, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, Ribosomal protein uL29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36/RNA Complex Functional site 1) chain F residue 57-73 type prosite sequence LEKITGQKPVVTYARKS description RIBOSOMAL_L5 Ribosomal protein L5 signature. LekITGQkpVvTyARkS source prosite : PS00358 2) chain D residue 101-124 type prosite sequence FQAGQMVDVTGESKGKGFAGTIKR description RIBOSOMAL_L3 Ribosomal protein L3 signature. FqagqmvDvtGeSkGKGfaGtikR source prosite : PS00474 3) chain 5 residue 5-30 type prosite sequence KTKSGAAKRFKKTAGGLKHKHAFKSH description RIBOSOMAL_L35 Ribosomal protein L35 signature. KTKsGAaKRFkktagglkhkhafk..SH source prosite : PS00936 4) chain L residue 109-139 type prosite sequence KVMLSGEVGRAVTLKGIAATKGARAAIEAAG description RIBOSOMAL_L15 Ribosomal protein L15 signature. KVMLsGeVgra..VtLkgiaATkgAraaIeaaG source prosite : PS00475 5) chain C residue 218-229 type prosite sequence PTVRGVAMNPVD description RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGVAmNPvD source prosite : PS00467 6) chain Y residue 39-53 type prosite sequence QSHLLSQVKRDIARV description RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLSqVKRDIARV source prosite : PS00579 7) chain M residue 59-70 type prosite sequence KRGGKIWIRVFP description RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRgGKIWIRVFP source prosite : PS00586 8) chain M residue 82-93 type prosite sequence RMGKGKGGVEYW description RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGgveyW source prosite : PS00701 9) chain I residue 127-142 type prosite sequence RTIAGSARSMGLNVEG description RIBOSOMAL_L11 Ribosomal protein L11 signature. RtIaGSarSMGlNVeG source prosite : PS00359 10) chain 4 residue 2-21 type prosite sequence KRTFQPSTLKRARVHGFRAR description RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpstlkRarvh.GFraR source prosite : PS00784 11) chain G residue 154-162 type prosite sequence PEPYKGKGV description RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV source prosite : PS00525 12) chain S residue 83-107 type prosite sequence KRIMPRAKGRADRIVKRSCHITVKV description RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadrivkrsCHITVkV source prosite : PS00464 13) chain U residue 7-24 type prosite sequence DDEVIVIAGKDKGKRGKV description RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVIaGkdKGkr.GkV source prosite : PS01108 14) chain 3 residue 17-36 type prosite sequence YTTDKNKRTKPEKIEIKKYD description RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTdKNkrtkPekIEikKYD source prosite : PS00582 15) chain J residue 105-127 type prosite sequence VKGMLPKNPLGRDMYRKLKVYKG description RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPknpl.GRdmyrkLkVYkG source prosite : PS00783 16) chain H residue 13-40 type prosite sequence GNLGDKVNIKGGYARNFLLPQGKATVAT description RIBOSOMAL_L9 Ribosomal protein L9 signature. GnlGdkvnIkgGYarNFLlpqgkAtvaT source prosite : PS00651 17) chain R residue 72-94 type prosite sequence VRIIKFRRRKHHMKRQGHRQWFT description RIBOSOMAL_L21 Ribosomal protein L21 signature. VriiKfrrRKhhmkrqGHRQwfT source prosite : PS01169 18) chain Q residue 54-70 type prosite sequence KRQFRALWIARINAGAR description RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRaLWIARINagaR source prosite : PS00937 19) chain 6 residue 11-37 type prosite sequence CRNCKIIRRDGIVRVICSAEPRHKQRQ description RIBOSOMAL_L36 Ribosomal protein L36 signature. CrnCkiIrRdgiVrViCsaepRHkQrQ source prosite : PS00828 20) chain N residue 34-56 type prosite sequence IKTTLPKAKELRRVAEPLITLAK description RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvaEpLITlAK source prosite : PS01167 21) chain P residue 87-102 type prosite sequence VKRRGDVRKAKLYYLR description RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGDVR.KAKLYYLR source prosite : PS01015 22) chain K residue 60-86 type prosite sequence AVVVRTKHGVRRTDGSIIRFDGNAAVL description RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkhgvrrt.DGsiirFdgNaaVL source prosite : PS00049

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