eF-site ID 6spc-abcdefghijklmnopqrstu PDB Code 6spc Chain a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u Title Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate Classification RIBOSOME Compound 16S rRNA Source ORGANISM_SCIENTIFIC: Pseudomonas aeruginosa; Sequence a:  AAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAG GCCUAACAAUGCAAGUCAGCGGAUAAAGGGAGCUUGCUCC UGGAUUCAGCGGCAGACGGGUGAGUAAUGCCUAGGAAUCU GCCUGGUAGUGGGGGAUAACGUCCGGAAACGGGCGCUAAU ACCGCAUACGUCCUGAGGGAGAAAGUGGGGGAUCUUCGGA CCUCACGCUAUCAGAUGAGCCUAGGUCGGAUUAGCUAGUU GGUGGGGUAAAGGCCUACCAAGGCGACGAUCCGUAACUGG UCUGAGAGGAUGAUCAGUCACACUGGAACUGAGACACGGU CCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACA AUGGGCGAAAGCCUGAUCCAGCCAUGCCGCGUGUGUGAAG AAGGUCUUCGGAUUGUAAAGCACUUUAAGUUGGGAGGAAG GGCAGUAAGUUAAUACCUUGCUGUUUUGACGUUACCAACA GAAUAAGCACCGGCUAACUUCGUGCCAGCAGCCGCGGUAA UACGAAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAA AGCGCGCGUAGGUGGUUCAGCAAGUUGGAUGUGAAAUCCC CGGGCUCAACCUGGGAACUGCAUCCAAAACUACUGAGCUA GAGUACGGUAGAGGGUGGUGGAAUUUCCUGUGUAGCGGUG AAAUGCGUAGAUAUAGGAAGGAACACCAGUGGCGAAGGCG ACCACCUGGACUGAUACUGACACUGAGGUGCGAAAGCGUG GGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGU AAACGAUGUCGACUAGCCGUUGGGAUCCUUGAGAUCUUAG UGGCGCAGCUAACGCGAUAAGUCGACCGCCUGGGGAGUAC GGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCG CACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCG AAGAACCUUACCUGGCCUUGACAUGCUGAGAACUUUCCAG AGAUGGAUUGGUGCCUUCGGGAACUCAGACACAGGUGCUG CAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAA GUCCCGUAACGAGCGCAACCCUUGUCCUUAGUUACCAGCA CCUCGGGUGGGCACUCUAAGGAGACUGCCGGUGACAAACC GGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUA CGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAG GGUUGCCAAGCCGCGAGGUGGAGCUAAUCCCAUAAAACCG AUCGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUGAA GUCGGAAUCGCUAGUAAUCGUGAAUCAGAAUGUCACGGUG AAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCA UGGGAGUGGGUUGCUCCAGAAGUAGCUAGUCUAACCGCAA GGGGGACGGUUACCACGGAGUGAUUCAUGACUGGGGUGAA GUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAU b:  QVNMRDMLKAGVHFGHQTRYWNPKMGKFIFGARNKIHIIN LEKTLPMFNEALTFVERLAAGKNKILFVGTKRSAGKIVRE EAARCGMPYVDHRWLGGMLTNYKTIRQSIKRLRDLETQSQ DGTKKEALMRSRDLEKLERSLGGIKDMGGLPDALFVIDVD HERIAITEANKLGIPVIGVVDTNSSPEGVDYVIPGNDDAI RAVQLYLNSMAEAVIRGKQGA c:  VHPNGIRLGIVKEHTSVWYADRKNYADYLFADLKVREYLQ DKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDV EKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSVAQQL ERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIAR TEWYREGRVPLHTLRADIDYATYEAHTTYGVIGVKVWIFK GEV d:  ARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQH GQRRGRLSDYGLQLREKQKVRRIYGVLERQFRGYYQEASR RKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVSHK AITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALEL CGQRGRVEWVEVDLDKKAGTFKSAPARSDLSADINENLIV ELYSK e:  GYIEKLVQVNRVAKTVKGGRIFAFTALTVVGDGKGRVGFG RGKAREVPAAIQKAMEAARRNMIQVDLNGTTLQYPTKSAH GASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYG STNPVNVVYATFKGLKNMQPEAVAAKRGK f:  RHYEIVFLVHPDQSEQVGGMVERYTKAIEEDGGKIHRLED WGRRQLAYAINNVHKAHYVLMNVECSAKALAELEDNFRAN DAVIRNLVMRRDEAVTEQSE g:  RRRVAAKREVLADPKYGSQILAKFMNHVMESGKKAVAERI VYGALDKVKERGKADPLETFEKALDAIAPLVEVKSRRVGG ATYQVPVEVRPSRRNALAMRWLVDFARKRGEKSMALRLAG ELLDAAEGKGAAVKKREDVHRMAEANKAFSHYRF h:  SMQDPLADMLTRIRNAQMAEKTVVSMPSSKLKAAVAKVLK DEGYIADFQISSEVKPQLSIELKYFEGKPVIEEVKRISRP GLRQYKSVEQLVRGGLGVSIVSTNKGVMTDRAARAAGVGG EVV i:  ATQNYGTGRRKTATARVFLRPGTGKISINNRGLDQFFGRE TARMVVRQPLELTETVEKFDIFVTVVGGGVSGQAGAIRHG ITRALIEYDETLRSSLRKAGYVTRDAREVERKKVGLRKAR KRPQYS j:  IRLKAFDHRLIDQSTQEIVETAKRTGAQVRGPIPLPTRKE RFTVLISPHVNKDARDQYEIRTHKRVLDIVQPTDKTVDAL MKLDLAAGVEVQISLG k:  KTVVDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFR GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGR ESAVRALNACGYKIASITDVTPIPHNGCRPPKKRR l:  NQLVRKPRKRMVDKSDVPALQNCPQRRGVCTRVYTTTPKK PNSALRKVCRVRLTNGFEVSSYIGGEGHNLQEHSVVLIRG GRVKDLPGVRYHTVRGSLDTSGVKDRKQRSKYG m:  RIAGVNIPDNKHTVISLTIYGVGRTTAQSICAATGVNPAA KIKDLSDEQIDQLRNEVAKITTEGDLRREINMNIKRLMDL GCYRGLRHRRGLPVRGQRTKTNARTRKGP n:  KESMKNRELKRQLTVAKYAKKRAELKAIIANPNSSAEERW NAQVALQKQPRDASASRLRNRCRLTGRPHGFYRKFGLSRN KLREAAMRGDVPGLVKAS o:  LSVEEKAQIVNEYKQAEGDTGSPEVQVALLSANINKLQDH FKANGKDHHSRRGLIRMVNQRRKLLDYLKGKDVSRYTALI GRLGLR p:  MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERIGFFN PVATGGEVRLSVDQERATYWLGQGAQPSERVAQLLKDA q:  RTLTGRVVSDKMDKTVTVLIERRVKHPIYGKYVKRSTKLH AHDESNQCRIGDLVTIRETRPLAKTKAWTLVDIVER r:  KEIDYKDLNTLKAYVSETGKIVPSRITGTKAKYQRQLATA IKRARYLALLPYTDSH s:  PRSLKKGPFIDLHLLKKVEVAVEKNDRKPIKTWSRRSMIL PHMVGLTIAVHNGRQHVPVLVNEDMVGHKLGEFAATRTYR t:  NTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAK DLEKAQAAFTAAVPVIDRMADKGIIHKNKAARHKSRLSGH IKALS u:  SREFYEKPTAERRRKAAAAVKRHAKKVQREQRRR Description (1)  30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21/RNA Complex Functional site 1) chain r residue 21-44 type prosite sequence IDYKDLNTLKAYVSETGKIVPSRI description RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.LntLkaYVSEt.GKIvpsRI source prosite : PS00057 2) chain j residue 29-44 type prosite sequence AKRTGAQVRGPIPLPT description RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT source prosite : PS00361 3) chain n residue 63-85 type prosite sequence RCRLTGRPHGFYRKFGLSRNKLR description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrltgrphgfyrkFGLSRnKLR source prosite : PS00527 4) chain b residue 6-17 type prosite sequence MRDMLKAGVHFG description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDMLKAGVHFG source prosite : PS00962 5) chain b residue 158-182 type prosite sequence PDALFVIDVDHERIAITEANKLGIP description RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDvdhEriaItEanklGIP source prosite : PS00963 6) chain g residue 20-46 type prosite sequence SQILAKFMNHVMESGKKAVAERIVYGA description RIBOSOMAL_S7 Ribosomal protein S7 signature. SqIlakFMnhvmesGKKavaerIVygA source prosite : PS00052 7) chain s residue 53-77 type prosite sequence NGRQHVPVLVNEDMVGHKLGEFAAT description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvlVnedmVGhkLGEFaaT source prosite : PS00323 8) chain o residue 39-69 type prosite sequence LQDHFKANGKDHHSRRGLIRMVNQRRKLLDY description RIBOSOMAL_S15 Ribosomal protein S15 signature. LqdHFkanGkDhhSrrgLirMvnqrrkLldY source prosite : PS00362 9) chain l residue 43-50 type prosite sequence KKPNSALR description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR source prosite : PS00055 10) chain e residue 29-61 type prosite sequence GRIFAFTALTVVGDGKGRVGFGRGKAREVPAAI description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifaFtAltVVGDgk.GrVGfGrgkar.EVpa.AI source prosite : PS00585 11) chain m residue 87-100 type prosite sequence RGLRHRRGLPVRGQ description RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ source prosite : PS00646 12) chain c residue 163-197 type prosite sequence ARTEWYREGRVPLHTLRADIDYATYEAHTTYGVIG description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyatyeahTtyGviG source prosite : PS00548 13) chain f residue 43-52 type prosite sequence GRRQLAYAIN description RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYaIN source prosite : PS01048 14) chain k residue 97-119 type prosite sequence VRALNACGYKIASITDVTPIPHN description RIBOSOMAL_S11 Ribosomal protein S11 signature. VrALn.AcGYkIasitDvTPiPHN source prosite : PS00054 15) chain h residue 100-117 type prosite sequence GVSIVSTNKGVMTDRAAR description RIBOSOMAL_S8 Ribosomal protein S8 signature. GvsIVSTNkGVMtdraAR source prosite : PS00053 16) chain d residue 94-118 type prosite sequence LECRLDNVVYRMGFGSTRSESRQLV description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEcRLdnvVYRmgfGsTrseSRqLV source prosite : PS00632 17) chain i residue 69-87 type prosite sequence GGGVSGQAGAIRHGITRAL description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGvsGQagAirhGiTRAL source prosite : PS00360

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