eF-site ID 6sc6-ABC
PDB Code 6sc6
Chain A, B, C

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Title dAb3/HOIP-RBR apo structure
Classification LIGASE
Compound E3 ubiquitin-protein ligase RNF31
Source (6SC6)
Sequence A:  QECAVCGWALPHNRMQALTSCECTICPDCFRQHFTIALKE
KHITDMVCPACGRPDLTDDTQLLSYFSTLDIQLRESLEPD
AYALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEAT
CPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNDPEYQ
AQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQ
FCSGCYNAFYAKNKCPEPNCRVKKSLHGHHPRDCLFYLRD
WTALRLQKLLQDNNVMFNTEPPGCRVIEQKEVPNGLRDEA
CGKETPAGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEE
LETATERYLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQ
SIPRR
B:  EVQLLESGGGLVQPGGSLRLSCAASGFTFRGYSMAWVRQA
PGKGLEWVSTISPIGTYTYYADSVKGRFTISRDNSKNTLY
LQMNSLRAEDTAVYYCAKGSYSRGTPFDYWGQGTLVTVS
C:  EVQLLESGGGLVQPGGSLRLSCAASGFTFRGYSMAWVRQA
PGKGLEWVSTISPIGTYTYYADSVKGRFTISRDNSKNTLY
LQMNSLRAEDTAVYYCAKGSYSRGTPFDYWGQGTLVTVSS
Description


Functional site

1) chain A
residue 699
type
sequence C
description binding site for residue ZN A 1101
source : AC1

2) chain A
residue 702
type
sequence C
description binding site for residue ZN A 1101
source : AC1

3) chain A
residue 722
type
sequence C
description binding site for residue ZN A 1101
source : AC1

4) chain A
residue 725
type
sequence C
description binding site for residue ZN A 1101
source : AC1

5) chain A
residue 717
type
sequence C
description binding site for residue ZN A 1102
source : AC2

6) chain A
residue 719
type
sequence C
description binding site for residue ZN A 1102
source : AC2

7) chain A
residue 744
type
sequence C
description binding site for residue ZN A 1102
source : AC2

8) chain A
residue 747
type
sequence C
description binding site for residue ZN A 1102
source : AC2

9) chain A
residue 799
type
sequence C
description binding site for residue ZN A 1103
source : AC3

10) chain A
residue 802
type
sequence C
description binding site for residue ZN A 1103
source : AC3

11) chain A
residue 817
type
sequence C
description binding site for residue ZN A 1103
source : AC3

12) chain A
residue 820
type
sequence C
description binding site for residue ZN A 1103
source : AC3

13) chain A
residue 825
type
sequence C
description binding site for residue ZN A 1104
source : AC4

14) chain A
residue 828
type
sequence C
description binding site for residue ZN A 1104
source : AC4

15) chain A
residue 836
type
sequence H
description binding site for residue ZN A 1104
source : AC4

16) chain A
residue 841
type
sequence C
description binding site for residue ZN A 1104
source : AC4

17) chain A
residue 871
type
sequence C
description binding site for residue ZN A 1105
source : AC5

18) chain A
residue 874
type
sequence C
description binding site for residue ZN A 1105
source : AC5

19) chain A
residue 890
type
sequence C
description binding site for residue ZN A 1105
source : AC5

20) chain A
residue 893
type
sequence C
description binding site for residue ZN A 1105
source : AC5

21) chain A
residue 898
type
sequence C
description binding site for residue ZN A 1106
source : AC6

22) chain A
residue 901
type
sequence C
description binding site for residue ZN A 1106
source : AC6

23) chain A
residue 926
type
sequence H
description binding site for residue ZN A 1106
source : AC6

24) chain A
residue 930
type
sequence C
description binding site for residue ZN A 1106
source : AC6

25) chain A
residue 911
type
sequence C
description binding site for residue ZN A 1107
source : AC7

26) chain A
residue 916
type
sequence C
description binding site for residue ZN A 1107
source : AC7

27) chain A
residue 923
type
sequence H
description binding site for residue ZN A 1107
source : AC7

28) chain A
residue 925
type
sequence H
description binding site for residue ZN A 1107
source : AC7

29) chain A
residue 969
type
sequence C
description binding site for residue ZN A 1108
source : AC8

30) chain A
residue 986
type
sequence C
description binding site for residue ZN A 1108
source : AC8

31) chain A
residue 998
type
sequence C
description binding site for residue ZN A 1108
source : AC8

32) chain A
residue 1001
type
sequence H
description binding site for residue ZN A 1108
source : AC8

33) chain A
residue 903
type
sequence N
description binding site for residue SO4 A 1109
source : AC9

34) chain A
residue 927
type
sequence P
description binding site for residue SO4 A 1109
source : AC9

35) chain A
residue 1064
type
sequence G
description binding site for residue SO4 A 1109
source : AC9

36) chain A
residue 1065
type
sequence Q
description binding site for residue SO4 A 1109
source : AC9

37) chain A
residue 884
type
sequence G
description binding site for residue SO4 A 1110
source : AD1

38) chain A
residue 885
type
sequence C
description binding site for residue SO4 A 1110
source : AD1

39) chain A
residue 886
type
sequence M
description binding site for residue SO4 A 1110
source : AD1

40) chain A
residue 932
type
sequence F
description binding site for residue SO4 A 1110
source : AD1

41) chain A
residue 935
type
sequence R
description binding site for residue SO4 A 1110
source : AD1

42) chain A
residue 1032
type
sequence R
description binding site for residue SO4 A 1111
source : AD2

43) chain A
residue 798
type
sequence W
description binding site for residue CL A 1112
source : AD3

44) chain A
residue 829
type
sequence K
description binding site for residue CL A 1112
source : AD3

45) chain B
residue 104
type
sequence G
description binding site for residue CL A 1112
source : AD3

46) chain A
residue 900
type
sequence G
description binding site for residue CL A 1113
source : AD4

47) chain A
residue 930
type
sequence C
description binding site for residue CL A 1113
source : AD4

48) chain A
residue 931
type
sequence L
description binding site for residue CL A 1113
source : AD4

49) chain A
residue 1011
type
sequence N
description binding site for residue CL A 1113
source : AD4

50) chain B
residue 52
type
sequence S
description binding site for residue SO4 B 201
source : AD5

51) chain B
residue 53
type
sequence P
description binding site for residue SO4 B 201
source : AD5

52) chain B
residue 54
type
sequence I
description binding site for residue SO4 B 201
source : AD5

53) chain B
residue 56
type
sequence T
description binding site for residue SO4 B 201
source : AD5

54) chain B
residue 27
type
sequence F
description binding site for residue SO4 B 202
source : AD6

55) chain B
residue 28
type
sequence T
description binding site for residue SO4 B 202
source : AD6

56) chain B
residue 32
type
sequence Y
description binding site for residue SO4 B 202
source : AD6

57) chain A
residue 893-902
type prosite
sequence CRHQFCSGCY
description ZF_RING_1 Zinc finger RING-type signature. CrHqFCsgCY
source prosite : PS00518

58) chain A
residue 799
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

59) chain A
residue 802
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

60) chain A
residue 817
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

61) chain A
residue 820
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

62) chain A
residue 825
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

63) chain A
residue 828
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

64) chain A
residue 836
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

65) chain A
residue 841
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

66) chain A
residue 871
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

67) chain A
residue 874
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

68) chain A
residue 890
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

69) chain A
residue 893
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

70) chain A
residue 898
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

71) chain A
residue 901
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

72) chain A
residue 916
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

73) chain A
residue 925
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI7

74) chain A
residue 735
type CROSSLNK
sequence K
description (Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:27572974
source Swiss-Prot : SWS_FT_FI8

75) chain A
residue 783
type CROSSLNK
sequence K
description (Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:27572974
source Swiss-Prot : SWS_FT_FI8

76) chain A
residue 875
type CROSSLNK
sequence K
description (Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:27572974
source Swiss-Prot : SWS_FT_FI8

77) chain A
residue 699-749
type ZN_FING
sequence CAVCGWALPHNRMQALTSCECTICPDCFRQHFTIALKEKH
ITDMVCPACGR
description RING-type 1 => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI1

78) chain A
residue 779-841
type ZN_FING
sequence ALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCP
QCHQTFCVRCKRQWEEQHRGRSC
description IBR-type => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI2

79) chain A
residue 871-901
type ZN_FING
sequence CPKCKFSYALARGGCMHFHCTQCRHQFCSGC
description RING-type 2; atypical => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI3

80) chain A
residue 885
type ACT_SITE
sequence C
description ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU01221
source Swiss-Prot : SWS_FT_FI4

81) chain A
residue 699
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221, ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI5

82) chain A
residue 702
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221, ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI5

83) chain A
residue 722
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221, ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI5

84) chain A
residue 725
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01221, ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI5

85) chain A
residue 719
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI6

86) chain A
residue 717
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI6

87) chain A
residue 744
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI6

88) chain A
residue 747
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:35294289, ECO:0007744|PDB:7V8F, ECO:0007744|PDB:7V8G
source Swiss-Prot : SWS_FT_FI6


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