eF-site ID 6rzz-u
PDB Code 6rzz
Chain u

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Title Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Classification RIBOSOME
Compound 25S ribosomal RNA
Source ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; ORGANISM_COMMON: Baker's yeast;
Sequence u:  AERVMQEKLRNRVDIPLEQCLFCEHNKHFKDVEENLEHMF
RTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQG
RTLTAVRQHMLAKRHCKIPYESEDERLEISEFYDFTSNDG
IELHLPTGIKVGHRSLQRYYKQDLKPEVILTEGQGTLVAA
ETRSFLPAFDKKGVQTQQRVWQTERFDKKRLDKRSAKFVN
NQPHYRDQLLQ
Description (1)  60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L11-A, 60S ribosomal protein L9-A, 60S ribosomal protein L6-A, 60S ribosomal protein L8-A, 60S ribosomal protein L16-B, 60S ribosomal protein L13-A, 60S ribosomal protein L23-A, 60S ribosomal protein L14-A, 60S ribosomal protein L28, 60S ribosomal protein L15-A, 60S ribosomal protein L5, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L17-A, 60S ribosomal protein L22-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L35-A, 60S ribosomal protein L29, 60S ribosomal protein L7-A, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, Eukaryotic translation initiation factor 6, Large subunit GTPase 1, uL1, Probable metalloprotease ARX1, Tyrosine-protein phosphatase YVH1, Cytoplasmic 60S subunit biogenesis factor REI1, 60S ribosomal protein L24-A, 60S ribosomal export protein NMD3/RNA Complex


Functional site

1) chain u
residue 217
type
sequence C
description binding site for residue ZN u 401
source : AC7

2) chain u
residue 220
type
sequence C
description binding site for residue ZN u 401
source : AC7

3) chain u
residue 233
type
sequence H
description binding site for residue ZN u 401
source : AC7

4) chain u
residue 239
type
sequence H
description binding site for residue ZN u 401
source : AC7

5) chain u
residue 164
type
sequence C
description binding site for residue ZN u 402
source : AC8

6) chain u
residue 167
type
sequence C
description binding site for residue ZN u 402
source : AC8

7) chain u
residue 182
type
sequence H
description binding site for residue ZN u 402
source : AC8

8) chain u
residue 187
type
sequence H
description binding site for residue ZN u 402
source : AC8

9) chain u
residue 162-187
type ZN_FING
sequence EQCLFCEHNKHFKDVEENLEHMFRTH
description C2H2-type 2
source Swiss-Prot : SWS_FT_FI2

10) chain u
residue 215-239
type ZN_FING
sequence NICIVCNYQGRTLTAVRQHMLAKRH
description C2H2-type 3
source Swiss-Prot : SWS_FT_FI3


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