|
eF-site ID
|
6rzz-u |
PDB Code
|
6rzz |
Chain
|
u |
|
click to enlarge
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Title
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles |
Classification
|
RIBOSOME |
Compound
|
25S ribosomal RNA |
Source
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ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; ORGANISM_COMMON: Baker's yeast; |
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Sequence
|
u: |
AERVMQEKLRNRVDIPLEQCLFCEHNKHFKDVEENLEHMF
RTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQG
RTLTAVRQHMLAKRHCKIPYESEDERLEISEFYDFTSNDG
IELHLPTGIKVGHRSLQRYYKQDLKPEVILTEGQGTLVAA
ETRSFLPAFDKKGVQTQQRVWQTERFDKKRLDKRSAKFVN
NQPHYRDQLLQ
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Description
|
(1) |
60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L11-A, 60S ribosomal protein L9-A, 60S ribosomal protein L6-A, 60S ribosomal protein L8-A, 60S ribosomal protein L16-B, 60S ribosomal protein L13-A, 60S ribosomal protein L23-A, 60S ribosomal protein L14-A, 60S ribosomal protein L28, 60S ribosomal protein L15-A, 60S ribosomal protein L5, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L17-A, 60S ribosomal protein L22-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L35-A, 60S ribosomal protein L29, 60S ribosomal protein L7-A, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, Eukaryotic translation initiation factor 6, Large subunit GTPase 1, uL1, Probable metalloprotease ARX1, Tyrosine-protein phosphatase YVH1, Cytoplasmic 60S subunit biogenesis factor REI1, 60S ribosomal protein L24-A, 60S ribosomal export protein NMD3/RNA Complex
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Functional site
|
|
1)
|
chain |
u |
residue |
217 |
type |
|
sequence |
C
|
description |
binding site for residue ZN u 401
|
source |
: AC7
|
|
2)
|
chain |
u |
residue |
220 |
type |
|
sequence |
C
|
description |
binding site for residue ZN u 401
|
source |
: AC7
|
|
3)
|
chain |
u |
residue |
233 |
type |
|
sequence |
H
|
description |
binding site for residue ZN u 401
|
source |
: AC7
|
|
4)
|
chain |
u |
residue |
239 |
type |
|
sequence |
H
|
description |
binding site for residue ZN u 401
|
source |
: AC7
|
|
5)
|
chain |
u |
residue |
164 |
type |
|
sequence |
C
|
description |
binding site for residue ZN u 402
|
source |
: AC8
|
|
6)
|
chain |
u |
residue |
167 |
type |
|
sequence |
C
|
description |
binding site for residue ZN u 402
|
source |
: AC8
|
|
7)
|
chain |
u |
residue |
182 |
type |
|
sequence |
H
|
description |
binding site for residue ZN u 402
|
source |
: AC8
|
|
8)
|
chain |
u |
residue |
187 |
type |
|
sequence |
H
|
description |
binding site for residue ZN u 402
|
source |
: AC8
|
|
9)
|
chain |
u |
residue |
162-187 |
type |
ZN_FING |
sequence |
EQCLFCEHNKHFKDVEENLEHMFRTH
|
description |
C2H2-type 2
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
10)
|
chain |
u |
residue |
215-239 |
type |
ZN_FING |
sequence |
NICIVCNYQGRTLTAVRQHMLAKRH
|
description |
C2H2-type 3
|
source |
Swiss-Prot : SWS_FT_FI3
|
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