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eF-site ID
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6rzz-l |
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PDB Code
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6rzz |
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Chain
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l |
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click to enlarge
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Title
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles |
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Classification
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RIBOSOME |
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Compound
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25S ribosomal RNA |
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Source
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ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; ORGANISM_COMMON: Baker's yeast; |
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Sequence
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l: |
VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKR
RYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRA
QLTLKRCKHFELGG
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Description
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(1) |
60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L11-A, 60S ribosomal protein L9-A, 60S ribosomal protein L6-A, 60S ribosomal protein L8-A, 60S ribosomal protein L16-B, 60S ribosomal protein L13-A, 60S ribosomal protein L23-A, 60S ribosomal protein L14-A, 60S ribosomal protein L28, 60S ribosomal protein L15-A, 60S ribosomal protein L5, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L17-A, 60S ribosomal protein L22-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L35-A, 60S ribosomal protein L29, 60S ribosomal protein L7-A, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, Eukaryotic translation initiation factor 6, Large subunit GTPase 1, uL1, Probable metalloprotease ARX1, Tyrosine-protein phosphatase YVH1, Cytoplasmic 60S subunit biogenesis factor REI1, 60S ribosomal protein L24-A, 60S ribosomal export protein NMD3/RNA Complex
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Functional site
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1)
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chain |
l |
| residue |
12 |
| type |
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| sequence |
C
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| description |
binding site for residue ZN l 201
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| source |
: AC3
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2)
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chain |
l |
| residue |
17 |
| type |
|
| sequence |
C
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| description |
binding site for residue ZN l 201
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| source |
: AC3
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3)
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chain |
l |
| residue |
74 |
| type |
|
| sequence |
C
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| description |
binding site for residue ZN l 201
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| source |
: AC3
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4)
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chain |
l |
| residue |
77 |
| type |
|
| sequence |
C
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| description |
binding site for residue ZN l 201
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| source |
: AC3
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5)
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chain |
l |
| residue |
63-74 |
| type |
prosite |
| sequence |
KTTKKVVLRLEC
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| description |
RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKvvLRleC
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| source |
prosite : PS01172
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