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eF-site ID
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6rip-C |
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PDB Code
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6rip |
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Chain
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C |
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click to enlarge
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Title
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Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex in swiveled state |
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Classification
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TRANSCRIPTION |
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Compound
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Non-template DNA |
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Source
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(6RIP) |
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Sequence
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C: |
VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ
DPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD
VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE
VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK
GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR
RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL
VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD
VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL
LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS
ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG
RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE
VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL
GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL
SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI
ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD
EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE
SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM
GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG
GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ
NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR
VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR
DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD
ILVGKVTPKVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK
RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG
VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH
EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG
DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV
PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE
FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA
TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER
PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
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Description
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(1) |
DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit omega/DNA Complex
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Functional site
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1)
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chain |
C |
| residue |
1063-1075 |
| type |
prosite |
| sequence |
GDKMAGRHGNKGV
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV
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| source |
prosite : PS01166
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