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eF-site ID
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6ri5-J |
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PDB Code
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6ri5 |
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Chain
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J |
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click to enlarge
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Title
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles |
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Classification
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RIBOSOME |
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Compound
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25S RNA |
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Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
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J: |
SQPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALN
ISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK
AIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQ
ALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKV
RSAEYYAKKRAFTKKVSSASAAASESDVAKQLASFGY
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Description
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Functional site
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1)
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chain |
J |
| residue |
83-106 |
| type |
prosite |
| sequence |
IRGMVSHKTARGKAALERLKIFEG
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| description |
RIBOSOMAL_L13 Ribosomal protein L13 signature. IRGMVShktarGKaalerLkIFeG
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| source |
prosite : PS00783
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2)
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chain |
J |
| residue |
185 |
| type |
MOD_RES |
| sequence |
S
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| description |
Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:19779198
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| source |
Swiss-Prot : SWS_FT_FI4
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3)
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chain |
J |
| residue |
187 |
| type |
MOD_RES |
| sequence |
S
|
| description |
Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
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| source |
Swiss-Prot : SWS_FT_FI5
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4)
|
chain |
J |
| residue |
176 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
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| source |
Swiss-Prot : SWS_FT_FI6
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