eF-site ID 6ri5-J
PDB Code 6ri5
Chain J

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Title Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Classification RIBOSOME
Compound 25S RNA
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence J:  SQPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALN
ISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK
AIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQ
ALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKV
RSAEYYAKKRAFTKKVSSASAAASESDVAKQLASFGY
Description


Functional site

1) chain J
residue 83-106
type prosite
sequence IRGMVSHKTARGKAALERLKIFEG
description RIBOSOMAL_L13 Ribosomal protein L13 signature. IRGMVShktarGKaalerLkIFeG
source prosite : PS00783

2) chain J
residue 185
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:19779198
source Swiss-Prot : SWS_FT_FI4

3) chain J
residue 187
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
source Swiss-Prot : SWS_FT_FI5

4) chain J
residue 176
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
source Swiss-Prot : SWS_FT_FI6


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