eF-site ID 6r9x-A
PDB Code 6r9x
Chain A

click to enlarge
Title Human Cyclophilin D in complex with N-cyclopentyl-N'-pyridin-2-ylmethyl-oxalamide
Classification ISOMERASE
Compound Peptidyl-prolyl cis-trans isomerase F, mitochondrial
Source (PPIF_HUMAN)
Sequence A:  GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT
GEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS
RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW
LDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC
GQLS
Description


Functional site

1) chain A
residue 97
type
sequence R
description binding site for residue JW2 A 301
source : AC1

2) chain A
residue 102
type
sequence F
description binding site for residue JW2 A 301
source : AC1

3) chain A
residue 103
type
sequence M
description binding site for residue JW2 A 301
source : AC1

4) chain A
residue 105
type
sequence Q
description binding site for residue JW2 A 301
source : AC1

5) chain A
residue 114
type
sequence G
description binding site for residue JW2 A 301
source : AC1

6) chain A
residue 143
type
sequence A
description binding site for residue JW2 A 301
source : AC1

7) chain A
residue 144
type
sequence N
description binding site for residue JW2 A 301
source : AC1

8) chain A
residue 153
type
sequence Q
description binding site for residue JW2 A 301
source : AC1

9) chain A
residue 155
type
sequence F
description binding site for residue JW2 A 301
source : AC1

10) chain A
residue 168
type
sequence H
description binding site for residue JW2 A 301
source : AC1

11) chain A
residue 90-107
type prosite
sequence YKGSTFHRVIPSFMCQAG
description CSA_PPIASE_1 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. YkgStFHRVIpsFMcQAG
source prosite : PS00170

12) chain A
residue 67
type MOD_RES
sequence K
description N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q99KR7
source Swiss-Prot : SWS_FT_FI1

13) chain A
residue 86
type MOD_RES
sequence K
description N6-succinyllysine => ECO:0000250|UniProtKB:Q99KR7
source Swiss-Prot : SWS_FT_FI2

14) chain A
residue 175
type MOD_RES
sequence I
description N6-succinyllysine => ECO:0000250|UniProtKB:Q99KR7
source Swiss-Prot : SWS_FT_FI2

15) chain A
residue 190
type MOD_RES
sequence K
description N6-succinyllysine => ECO:0000250|UniProtKB:Q99KR7
source Swiss-Prot : SWS_FT_FI2

16) chain A
residue 167
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:Q99KR7
source Swiss-Prot : SWS_FT_FI3

17) chain A
residue 203
type MOD_RES
sequence C
description S-nitrosocysteine => ECO:0000250|UniProtKB:Q99KR7
source Swiss-Prot : SWS_FT_FI4


Display surface

Download
Links