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|
eF-site ID
|
6r8y-H |
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PDB Code
|
6r8y |
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Chain
|
H |
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click to enlarge
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Title
|
Cryo-EM structure of NCP-6-4PP(-1)-UV-DDB |
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Classification
|
DNA BINDING PROTEIN |
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Compound
|
Histone H3.1 |
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Source
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(DDB2_HUMAN) |
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Sequence
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H: |
RKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVND
IFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAK
HAVSEGTKAVTKYTSAK
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Description
|
(1) |
Histone H3.1, Histone H4, Histone H2A type 1-B/E, Histone H2B type 1-J, DNA damage-binding protein 1, DNA damage-binding protein 2/DNA Complex
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Functional site
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|
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1)
|
chain |
H |
| residue |
37 |
| type |
MOD_RES |
| sequence |
S
|
| description |
N6-glutaryllysine; alternate => ECO:0000269|PubMed:31542297
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
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2)
|
chain |
H |
| residue |
47 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62806
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| source |
Swiss-Prot : SWS_FT_FI11
|
|
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3)
|
chain |
H |
| residue |
109 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62806
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| source |
Swiss-Prot : SWS_FT_FI11
|
|
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4)
|
chain |
H |
| residue |
58 |
| type |
MOD_RES |
| sequence |
K
|
| description |
Phosphothreonine => ECO:0000250|UniProtKB:P62806
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| source |
Swiss-Prot : SWS_FT_FI12
|
|
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5)
|
chain |
H |
| residue |
121 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:16307923, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:16713563
|
| source |
Swiss-Prot : SWS_FT_FI18
|
|
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6)
|
chain |
H |
| residue |
44 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0000269|PubMed:32789493
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
7)
|
chain |
H |
| residue |
86 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0000269|PubMed:32789493
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
8)
|
chain |
H |
| residue |
35 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:21726816
|
| source |
Swiss-Prot : SWS_FT_FI20
|
|
|
9)
|
chain |
H |
| residue |
80 |
| type |
MOD_RES |
| sequence |
R
|
| description |
Phosphotyrosine => ECO:0007744|PubMed:24275569
|
| source |
Swiss-Prot : SWS_FT_FI13
|
|
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10)
|
chain |
H |
| residue |
87 |
| type |
CROSSLNK |
| sequence |
R
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25218447
|
| source |
Swiss-Prot : SWS_FT_FI14
|
|
|
11)
|
chain |
H |
| residue |
93 |
| type |
CROSSLNK |
| sequence |
R
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25218447
|
| source |
Swiss-Prot : SWS_FT_FI14
|
|
|
12)
|
chain |
H |
| residue |
35 |
| type |
MOD_RES |
| sequence |
K
|
| description |
Phosphoserine; by PAK2 => ECO:0000269|PubMed:21724829, ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
|
| source |
Swiss-Prot : SWS_FT_FI8
|
|
|
13)
|
chain |
H |
| residue |
117 |
| type |
MOD_RES |
| sequence |
K
|
| description |
Phosphoserine; by PAK2 => ECO:0000269|PubMed:21724829, ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
|
| source |
Swiss-Prot : SWS_FT_FI8
|
|
|
14)
|
chain |
H |
| residue |
121 |
| type |
MOD_RES |
| sequence |
K
|
| description |
Phosphoserine; by PAK2 => ECO:0000269|PubMed:21724829, ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
|
| source |
Swiss-Prot : SWS_FT_FI8
|
|
|
15)
|
chain |
H |
| residue |
36 |
| type |
MOD_RES |
| sequence |
E
|
| description |
Phosphotyrosine => ECO:0007744|PubMed:15592455, ECO:0007744|PubMed:20068231
|
| source |
Swiss-Prot : SWS_FT_FI9
|
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