|
|
eF-site ID
|
6r8y-D |
|
PDB Code
|
6r8y |
|
Chain
|
D |
|
click to enlarge
|
|
|
Title
|
Cryo-EM structure of NCP-6-4PP(-1)-UV-DDB |
|
Classification
|
DNA BINDING PROTEIN |
|
Compound
|
Histone H3.1 |
|
Source
|
(DDB2_HUMAN) |
|
|
Sequence
|
D: |
RKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVND
IFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAK
HAVSEGTKAVTKYTSAK
|
|
|
Description
|
(1) |
Histone H3.1, Histone H4, Histone H2A type 1-B/E, Histone H2B type 1-J, DNA damage-binding protein 1, DNA damage-binding protein 2/DNA Complex
|
|
Functional site
|
|
|
1)
|
chain |
D |
| residue |
121 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:16307923, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:16713563
|
| source |
Swiss-Prot : SWS_FT_FI18
|
|
|
2)
|
chain |
D |
| residue |
35 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:21726816
|
| source |
Swiss-Prot : SWS_FT_FI20
|
|
|
3)
|
chain |
D |
| residue |
93-115 |
| type |
prosite |
| sequence |
REIQTAVRLLLPGELAKHAVSEG
|
| description |
HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
|
| source |
prosite : PS00357
|
|
|
4)
|
chain |
D |
| residue |
44 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0000269|PubMed:32789493
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
5)
|
chain |
D |
| residue |
86 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0000269|PubMed:32789493
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
6)
|
chain |
D |
| residue |
117 |
| type |
MOD_RES |
| sequence |
K
|
| description |
Phosphoserine; by PAK2 => ECO:0000269|PubMed:21724829, ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
|
| source |
Swiss-Prot : SWS_FT_FI8
|
|
|
7)
|
chain |
D |
| residue |
121 |
| type |
MOD_RES |
| sequence |
K
|
| description |
Phosphoserine; by PAK2 => ECO:0000269|PubMed:21724829, ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
|
| source |
Swiss-Prot : SWS_FT_FI8
|
|
|
8)
|
chain |
D |
| residue |
109 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62806
|
| source |
Swiss-Prot : SWS_FT_FI11
|
|
|
9)
|
chain |
D |
| residue |
93 |
| type |
CROSSLNK |
| sequence |
R
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25218447
|
| source |
Swiss-Prot : SWS_FT_FI14
|
|
|
10)
|
chain |
D |
| residue |
116 |
| type |
CROSSLNK |
| sequence |
T
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:19818714
|
| source |
Swiss-Prot : SWS_FT_FI15
|
|
|
|