|
eF-site ID
|
6r8y-A |
PDB Code
|
6r8y |
Chain
|
A |
|
click to enlarge
|
|
Title
|
Cryo-EM structure of NCP-6-4PP(-1)-UV-DDB |
Classification
|
DNA BINDING PROTEIN |
Compound
|
Histone H3.1 |
Source
|
(DDB2_HUMAN) |
|
Sequence
|
A: |
VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI
AQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHA
KRVTIMPKDIQLARRIRGERA
|
|
Description
|
(1) |
Histone H3.1, Histone H4, Histone H2A type 1-B/E, Histone H2B type 1-J, DNA damage-binding protein 1, DNA damage-binding protein 2/DNA Complex
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
38 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:16307923, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:16713563
|
source |
Swiss-Prot : SWS_FT_FI18
|
|
2)
|
chain |
A |
residue |
80 |
type |
MOD_RES |
sequence |
K
|
description |
N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435, ECO:0000269|PubMed:29211711
|
source |
Swiss-Prot : SWS_FT_FI21
|
|
3)
|
chain |
A |
residue |
81 |
type |
MOD_RES |
sequence |
T
|
description |
Phosphothreonine => ECO:0000269|PubMed:20850016
|
source |
Swiss-Prot : SWS_FT_FI22
|
|
4)
|
chain |
A |
residue |
87 |
type |
MOD_RES |
sequence |
S
|
description |
Phosphoserine => ECO:0000250|UniProtKB:P84243
|
source |
Swiss-Prot : SWS_FT_FI23
|
|
5)
|
chain |
A |
residue |
108 |
type |
MOD_RES |
sequence |
T
|
description |
Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3
|
source |
Swiss-Prot : SWS_FT_FI24
|
|
6)
|
chain |
A |
residue |
116 |
type |
MOD_RES |
sequence |
K
|
description |
N6-glutaryllysine; alternate => ECO:0000269|PubMed:31542297
|
source |
Swiss-Prot : SWS_FT_FI25
|
|
7)
|
chain |
A |
residue |
123 |
type |
MOD_RES |
sequence |
K
|
description |
N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435, ECO:0000269|PubMed:27436229
|
source |
Swiss-Prot : SWS_FT_FI26
|
|
8)
|
chain |
A |
residue |
67-75 |
type |
prosite |
sequence |
PFQRLVREI
|
description |
HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
|
source |
prosite : PS00959
|
|
|
|