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eF-site ID
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6r87-R |
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PDB Code
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6r87 |
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Chain
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R |
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click to enlarge
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Title
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Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) |
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Classification
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RIBOSOME |
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Compound
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Protein VMS1,Vms1,Protein VMS1,Vms1 |
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Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
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R: |
LKKNDLYIFDLSEQLLNSLKLMSCSVCQXSHYQTDYHLMN
VKRNLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPYIY
FKSKYVLAIYKSLFNKRSLSNPNEALTFWNSQENPMAISA
LFMVGGGHFAGAIVSHQRLNETLIEQAVNFLEHKTFHRYT
SALRRYNESALKTDIQGVLKDWEPYLSKCDNIFIRARNVS
DKKIFTDNTVLNKGDERIKSFPFTTNRPTVLELKKAWCEL
SYLKILPKEIISLLKKGRAPLLISFLKKNKLDGNFRLKPE
SKYSLTPTMLHYASQQGMKQMALILLSNIKCDPTIKNRLG
RTAWDLNRNDDVRHAFQIARYNLGXXXXXXXXXXX
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Description
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(1) |
Protein VMS1,Vms1,Protein VMS1,Vms1, Eukaryotic translation initiation factor 6, 60S ribosomal protein L34-A, 60S ribosomal protein L7-A, 60S ribosomal protein L35-A, 60S ribosomal protein L8-A, 60S ribosomal protein L36-A, 60S ribosomal protein L9-A, 60S ribosomal protein L37-A, 60S ribosomal protein L11-B, 60S ribosomal protein L38, 60S ribosomal protein L13-A, 60S ribosomal protein L39, 60S ribosomal protein L14-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L10, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L12-A, 60S acidic ribosomal protein P0, 60S ribosomal protein L23-A, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L42-A, 60S ribosomal protein L28, 60S ribosomal protein L43-A, 60S ribosomal protein L29, 60S ribosomal protein L2-A, 60S ribosomal protein L30, 60S ribosomal protein L3, 60S ribosomal protein L31-A, 60S ribosomal protein L4-A, 60S ribosomal protein L32, 60S ribosomal protein L5, 60S ribosomal protein L33-A, 60S ribosomal protein L6-A, 60S ribosomal protein L1-A/RNA Complex
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Functional site
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1)
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chain |
R |
| residue |
74 |
| type |
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| sequence |
C
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| description |
binding site for residue ZN R 601
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| source |
: AC1
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2)
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chain |
R |
| residue |
77 |
| type |
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| sequence |
C
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| description |
binding site for residue ZN R 601
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| source |
: AC1
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3)
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chain |
R |
| residue |
90 |
| type |
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| sequence |
H
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| description |
binding site for residue ZN R 601
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| source |
: AC1
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4)
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chain |
R |
| residue |
96 |
| type |
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| sequence |
H
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| description |
binding site for residue ZN R 601
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| source |
: AC1
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5)
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chain |
R |
| residue |
74-96 |
| type |
prosite |
| sequence |
CSVCQXSHYQTDYH
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| description |
ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Csv..CqmsFdsrneqkaHyqtdyH
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| source |
prosite : PS00028
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