eF-site ID 6qx1-ABCD PDB Code 6qx1 Chain A, B, C, D click to enlarge Title 2.7A structure of benzoisoxazole 3 with S.aureus DNA gyrase and DNA. Classification ISOMERASE Compound DNA gyrase subunit B Source (6QX1) Sequence A:  INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRR ILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYE AMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLL ANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAE LMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDG ITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQ TSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAM ESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNEL LNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEI QLG B:  KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILP LRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLA KARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGY VYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLED AIEADQTFEMLMGDVVENRRQFIEDNAVY C:  NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRI LYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEA MVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMT KITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLA NGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAEL MEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVI EERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGI TDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQT SFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQY NLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAME SLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELL NYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQ L D:  KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILP LRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLA KARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGY VYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLED AIEADQTFEMLMGDVVENRRQFIEDNAVY Description Functional site 1) chain B residue 508 type sequence D description binding site for residue MN B 701 source : AC1 2) chain B residue 510 type sequence D description binding site for residue MN B 701 source : AC1 3) chain A residue 30 type sequence I description binding site for residue JK8 B 702 source : AC2 4) chain A residue 31 type sequence V description binding site for residue JK8 B 702 source : AC2 5) chain A residue 179 type sequence M description binding site for residue JK8 B 702 source : AC2 6) chain A residue 342 type sequence R description binding site for residue JK8 B 702 source : AC2 7) chain A residue 343 type sequence P description binding site for residue JK8 B 702 source : AC2 8) chain B residue 630 type sequence R description binding site for residue JK8 B 702 source : AC2 9) chain B residue 633 type sequence I description binding site for residue JK8 B 702 source : AC2 10) chain B residue 634 type sequence E description binding site for residue JK8 B 702 source : AC2 11) chain B residue 637 type sequence A description binding site for residue JK8 B 702 source : AC2 12) chain A residue 313 type sequence N description binding site for residue GOL A 501 source : AC3 13) chain C residue 257 type sequence Q description binding site for residue GOL A 501 source : AC3 14) chain C residue 312 type sequence A description binding site for residue GOL A 501 source : AC3 15) chain A residue 44 type sequence P description binding site for residue GOL A 502 source : AC4 16) chain A residue 47 type sequence R description binding site for residue GOL A 502 source : AC4 17) chain A residue 48 type sequence R description binding site for residue GOL A 502 source : AC4 18) chain A residue 158 type sequence S description binding site for residue GOL A 502 source : AC4 19) chain D residue 508 type sequence D description binding site for residue MN D 701 source : AC5 20) chain D residue 510 type sequence D description binding site for residue MN D 701 source : AC5 21) chain C residue 179 type sequence M description binding site for residue JK8 D 702 source : AC6 22) chain C residue 336 type sequence I description binding site for residue JK8 D 702 source : AC6 23) chain C residue 342 type sequence R description binding site for residue JK8 D 702 source : AC6 24) chain C residue 343 type sequence P description binding site for residue JK8 D 702 source : AC6 25) chain D residue 630 type sequence R description binding site for residue JK8 D 702 source : AC6 26) chain D residue 633 type sequence I description binding site for residue JK8 D 702 source : AC6 27) chain D residue 634 type sequence E description binding site for residue JK8 D 702 source : AC6 28) chain D residue 637 type sequence A description binding site for residue JK8 D 702 source : AC6 29) chain D residue 639 type sequence Y description binding site for residue JK8 D 702 source : AC6 30) chain C residue 226 type sequence G description binding site for residue GLY C 501 source : AC7 31) chain C residue 490 type sequence L description binding site for residue GLY C 501 source : AC7 32) chain A residue 315 type sequence S description binding site for residue CL C 502 source : AC8 33) chain C residue 315 type sequence S description binding site for residue CL C 502 source : AC8 34) chain C residue 112 type sequence S description binding site for residue GOL C 503 source : AC9 35) chain C residue 113 type sequence M description binding site for residue GOL C 503 source : AC9 36) chain C residue 267 type sequence Q description binding site for residue GOL C 503 source : AC9 37) chain C residue 268 type sequence V description binding site for residue GOL C 503 source : AC9 38) chain C residue 269 type sequence N description binding site for residue GOL C 503 source : AC9 39) chain A residue 84 type sequence S description binding site for residue GOL E 2101 source : AD1 40) chain B residue 460 type SITE sequence K description Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898 source Swiss-Prot : SWS_FT_FI2 41) chain B residue 463 type SITE sequence N description Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898 source Swiss-Prot : SWS_FT_FI2 42) chain D residue 460 type SITE sequence K description Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898 source Swiss-Prot : SWS_FT_FI2 43) chain D residue 463 type SITE sequence N description Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898 source Swiss-Prot : SWS_FT_FI2 44) chain A residue 123 type ACT_SITE sequence Y description O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897 source Swiss-Prot : SWS_FT_FI1 45) chain C residue 123 type ACT_SITE sequence Y description O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897 source Swiss-Prot : SWS_FT_FI1 46) chain B residue 510 type ACT_SITE sequence D description O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897 source Swiss-Prot : SWS_FT_FI1 47) chain D residue 435 type ACT_SITE sequence E description O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897 source Swiss-Prot : SWS_FT_FI1 48) chain D residue 508 type ACT_SITE sequence D description O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897 source Swiss-Prot : SWS_FT_FI1 49) chain D residue 510 type ACT_SITE sequence D description O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897 source Swiss-Prot : SWS_FT_FI1 50) chain B residue 433-441 type prosite sequence LVEGDSAGG description TOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG source prosite : PS00177

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