eF-site ID 6qu1-A
PDB Code 6qu1
Chain A

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Title Crystal structure of the KAP1 RBCC domain in complex with the SMARCAD1 CUE1 domain at 3.7 angstrom resolution.
Classification LIGASE
Compound Transcription intermediary factor 1-beta,Transcription intermediary factor 1-beta
Source (SMRCD_HUMAN)
Sequence A:  LELLEHCGVCRERLRPEREPRLLPCLHSACSACLGPTVVD
CPVCKQQCFSKDIVENYFMRDCNVHKHEPLVLFCESCDTL
TCRDCQLNAHKDHQYQFLEDAVRNQRKLLASLVKRLGDKH
ATLQKSTKEVRSSIRQVSDVQKRVQVDVKMAILQIMKELN
KRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILR
FASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPHG
EMKFQWDLNAWTKSAEAFGKIV
Description


Functional site

1) chain A
residue 65
type
sequence C
description binding site for residue ZN A 1001
source : AC1

2) chain A
residue 66
type
sequence G
description binding site for residue ZN A 1001
source : AC1

3) chain A
residue 68
type
sequence C
description binding site for residue ZN A 1001
source : AC1

4) chain A
residue 88
type
sequence C
description binding site for residue ZN A 1001
source : AC1

5) chain A
residue 91
type
sequence C
description binding site for residue ZN A 1001
source : AC1

6) chain A
residue 83
type
sequence C
description binding site for residue ZN A 1002
source : AC2

7) chain A
residue 85
type
sequence H
description binding site for residue ZN A 1002
source : AC2

8) chain A
residue 117
type
sequence C
description binding site for residue ZN A 1002
source : AC2

9) chain A
residue 120
type
sequence C
description binding site for residue ZN A 1002
source : AC2

10) chain A
residue 209
type
sequence C
description binding site for residue ZN A 1003
source : AC3

11) chain A
residue 212
type
sequence H
description binding site for residue ZN A 1003
source : AC3

12) chain A
residue 229
type
sequence C
description binding site for residue ZN A 1003
source : AC3

13) chain A
residue 232
type
sequence C
description binding site for residue ZN A 1003
source : AC3

14) chain A
residue 221
type
sequence C
description binding site for residue ZN A 1004
source : AC4

15) chain A
residue 223
type
sequence S
description binding site for residue ZN A 1004
source : AC4

16) chain A
residue 224
type
sequence C
description binding site for residue ZN A 1004
source : AC4

17) chain A
residue 237
type
sequence H
description binding site for residue ZN A 1004
source : AC4

18) chain A
residue 240
type
sequence H
description binding site for residue ZN A 1004
source : AC4

19) chain A
residue 259
type CROSSLNK
sequence L
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI10

20) chain A
residue 254
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI10

21) chain A
residue 261
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI10

22) chain A
residue 319
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI10

23) chain A
residue 213
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00024
source Swiss-Prot : SWS_FT_FI4

24) chain A
residue 216
type BINDING
sequence P
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00024
source Swiss-Prot : SWS_FT_FI4

25) chain A
residue 237
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00024
source Swiss-Prot : SWS_FT_FI4

26) chain A
residue 241
type BINDING
sequence Q
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00024
source Swiss-Prot : SWS_FT_FI4

27) chain A
residue 209
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00024
source Swiss-Prot : SWS_FT_FI4

28) chain A
residue 212
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00024
source Swiss-Prot : SWS_FT_FI4

29) chain A
residue 232
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00024
source Swiss-Prot : SWS_FT_FI4

30) chain A
residue 304
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI11

31) chain A
residue 366
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447
source Swiss-Prot : SWS_FT_FI12

32) chain A
residue 377
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI13

33) chain A
residue 266
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:Q62318
source Swiss-Prot : SWS_FT_FI6

34) chain A
residue 304
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI7

35) chain A
residue 377
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI7

36) chain A
residue 340
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI8

37) chain A
residue 127
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI9

38) chain A
residue 272
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI9

39) chain A
residue 407
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI9


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