eF-site ID 6qt0-i
PDB Code 6qt0
Chain i

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Title Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Classification RIBOSOME
Compound 25S rRNA
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence i:  GKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPA
AKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTG
SASK
Description (1)  60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L11-B, 60S ribosomal protein L9-A, 60S ribosomal protein L6-A, 60S ribosomal protein L8-A, 60S ribosomal protein L10, 60S ribosomal protein L16-B, 60S ribosomal protein L13-A, 60S ribosomal protein L23-A, 60S ribosomal protein L14-A, 60S ribosomal protein L28, 60S ribosomal protein L15-A, 60S ribosomal protein L5, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L17-A, 60S ribosomal protein L22-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L35-A, eL29, 60S ribosomal protein L7-A, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, Eukaryotic translation initiation factor 6, Ubiquitin-60S ribosomal protein L40, Ribosome biogenesis protein RLP24, Cytoplasmic 60S subunit biogenesis factor REH1/RNA Complex


Functional site

1) chain i
residue 19
type
sequence C
description binding site for residue ZN i 101
source : AC2

2) chain i
residue 22
type
sequence C
description binding site for residue ZN i 101
source : AC2

3) chain i
residue 34
type
sequence C
description binding site for residue ZN i 101
source : AC2

4) chain i
residue 37
type
sequence C
description binding site for residue ZN i 101
source : AC2

5) chain i
residue 4-23
type prosite
sequence GTPSFGKRHNKSHTLCNRCG
description RIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSfGkRhnks.HtlCnRCG
source prosite : PS01077

6) chain i
residue 34
type ZN_FING
sequence C
description C2H2-type 2
source Swiss-Prot : SWS_FT_FI2

7) chain i
residue 37
type ZN_FING
sequence C
description C2H2-type 2
source Swiss-Prot : SWS_FT_FI2


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