eF-site ID 6qkl-ABCDEFGHIJN PDB Code 6qkl Chain A, B, C, D, E, F, G, H, I, J, N click to enlarge Title Mechanism of eIF6 release from the nascent 60S ribosomal subunit Classification RIBOSOME Compound 26S RIBOSOMAL RNA Source ORGANISM_SCIENTIFIC: Dictyostelium discoideum; ORGANISM_COMMON: Slime mold; Sequence A:  SHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKV HLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIEC PPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKN WYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVV RVIAHTQVHKLKLTQKKAHVLEIQVNGGSIVEKVNFAVAN FEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKL PRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVER NKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAH YGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEK ITLKFIDTSSKFGHGLHQTAEDKTKYFG B:  MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDH ASVDINLVGKKELTVDLWFGNRKQIACIKTITSIIENMIT GVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKI VRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQ LRSAIKYKDVRKFLDGIYVSERNVL C:  MSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQ KIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDV IIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHII KTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSP SISEE D:  MPPKVDPSEKVEVFLRVCGGEAGAMSTLAPKLGPLGVSPK KVGDDIAKATQPWKGMKVSVKLTIQNRIAVPEVLPSASAL VIKALKEPPRDRKKEKNIKHNGNIPLEEICKIAKTMRFKS LAVDFKGSVLEILGTAHSVGCKVNGKSPRDIQAGIQSGEI EVVEPK E:  SNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNR LPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRK DGVYIYFEDNAGVMCNPKGEVKGNILGPVAKECSDLWPKV ATNAGTIV F:  GRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKA STDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGG KDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGK PMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPG RQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVIT NHGTLAQYAKDIAAAN G:  TSLCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFR KINPRDIRWSMVY H:  IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGH SNNLRPKKKLL I:  MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVEN RLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQE LQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPD IDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGAL VHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVN DWTAIVGADTTATEISVIESIFAL J:  MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWR SGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQ TEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQ LKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIESE DYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK DVEEGDEKFE N:  AUUAGCAGUUUCGGGGGCGUAAUGCUCUCAGCUGAUUCUC AAACUCUGAACAUUUUUGGUAAGCAGAACUGGCGAUGUGG GUUGAACCAAAUAUUGGGAUAAGACGUCUAACAUUCACUA AUAGAUACCACAAAAGGUGUUAGUUCAUUAAGACAGCAGG ACGGUGGCCAUGGAAGUCGGUAUCCGCUAAGGAGUGUGUA ACAACUCACCUGCCAAAUGGACUAGCCCUGAAAAUGGAUG ACGCUAGCAGUGGAUGGUCGAUGCCCAAUCGUUAAAAGAA GUGAUAAUACUUUUAACAAUCCAACUGUUUAAUUAAAACA AAGCAUUGCGAUAAGCUUAAAAGCUUUUGACGCAAUGUGA UUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAGAUUCA ACCUAGCACGGGUAAACGGCGGGAGUAACUAUGACUCUCU UAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGC AUGAAUGGAUCAAUGAGAUUCCCACUGUCCCUAACUACUA UACAGCGAAACCACUGCAAGGGGAACGGGCCUUGCAAAAA CAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCU GAUAUUACAGUUUCAGGUGGGGAGUUUGGCUGGGGCGGCA CAUUUGUUAAAAGAUAACGCAAGUGUCCAAAGGCAGGCUC AGUGAGAACAGAAAUCUCACGUAGAGUAAAAGGGCAAAAG CCUGCUUGAUUCUGAUUUUCAGUACUAAUCGGAACUGGGA AACCAGGGCCUAUCGAUCCUUUAUGUGCUUAAAUCUUAAC CCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCU UGUGGCAGCCAAGCGCUCAUAGCGACGCUGCUUUUUGAUC CUUCGAUGUCGGCUCUUCUUAUCAUUGUGAAGCAGAAUUC ACAAAGUGUUGGAUUGUUCACCCACUAACAAGGAACGUGA GCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCU ACUGUUGUCAGUUUGCGUAAUAGUAGCAUGAUUUAGUACG AGAGGAACUGUCAUGCCGGAUCACUGGUCUGUAGGUUUAU UUGACAAAAUAGUGACCUGCCGCUACCAUCCGUUGGAUAA UGGCUGAACGCCUCUAAGUCAGAAUCCAUUCUAGAAAC Description (1)  60S ribosomal protein L3, 60S ribosomal protein L9, 60S ribosomal protein L23, 60S ribosomal protein L10, 60S ribosomal protein L24, Ubiquitin-60S ribosomal protein L40, Eukaryotic translation initiation factor 6, Ribosome maturation protein SBDS, 60S acidic ribosomal protein P0, 60S ribosomal protein L12/RNA Complex Functional site 1) chain F residue 108-129 type prosite sequence ADRLQTGMRGAFGKPMGTVARV description RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRgAFGKPmGtvARV source prosite : PS01257 2) chain G residue 8-25 type prosite sequence YSEFKIYPARGMKFVRGD description RIBOSOMAL_L24E Ribosomal protein L24e signature. YsEfkIyPArGmkFvRgD source prosite : PS01073 3) chain A residue 212-235 type prosite sequence FAENELIDVIGVTKGKGFNGVIKR description RIBOSOMAL_L3 Ribosomal protein L3 signature. FaeneliDviGvTkGKGfnGvikR source prosite : PS00474 4) chain B residue 161-182 type prosite sequence LRSAIKYKDVRKFLDGIYVSER description RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. LrsaIkyKdvRkFlDGIYVseR source prosite : PS00700 5) chain J residue 44-63 type prosite sequence EKDLDEVLQTHSVFVNVSKG description UPF0023 Uncharacterized protein family UPF0023 signature. EkdLDEVLqthsVFvnvsKG source prosite : PS01267 6) chain J residue 2 type MOD_RES sequence S description N-acetylserine => ECO:0000269|Ref.6, ECO:0007744|PubMed:22223895, ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1

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