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eF-site ID
|
6qc8-.V1 |
PDB Code
|
6qc8 |
Chain
|
V1 |
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click to enlarge
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Title
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Ovine respiratory complex I FRC open class 2 |
Classification
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ELECTRON TRANSPORT |
Compound
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NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial |
Source
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ORGANISM_COMMON: Sheep; ORGANISM_SCIENTIFIC: Ovis aries; |
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Sequence
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V1: |
KTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEI
LLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDG
RPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRA
MGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACG
SGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPP
FPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRE
RNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVT
GGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTG
LGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREG
VDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALG
DGAAWPVQGLIRHFRPELEERMQRFAQQHQ
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Description
|
(1) |
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (E.C.1.6.99.3,7.1.1.2), NDUFV2, NADH:ubiquinone oxidoreductase core subunit S1, NADH:ubiquinone oxidoreductase core subunit S2, NADH:ubiquinone oxidoreductase core subunit S3, NADH:ubiquinone oxidoreductase core subunit S7, NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial, NADH:ubiquinone oxidoreductase subunit V3, NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial, NADH:ubiquinone oxidoreductase subunit S4, NADH:ubiquinone oxidoreductase subunit A9, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2, NDUFA5, NADH:ubiquinone oxidoreductase subunit A6, NDUFA7, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, Acyl carrier protein, NADH-ubiquinone oxidoreductase chain 3 (E.C.7.1.1.2), NADH-ubiquinone oxidoreductase chain 1 (E.C.7.1.1.2), NADH-ubiquinone oxidoreductase chain 6 (E.C.7.1.1.2), NADH-ubiquinone oxidoreductase chain 4L (E.C.7.1.1.2), NADH-ubiquinone oxidoreductase chain 5 (E.C.7.1.1.2), NADH-ubiquinone oxidoreductase chain 4 (E.C.7.1.1.2), NADH-ubiquinone oxidoreductase chain 2 (E.C.7.1.1.2), NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11, NADH:ubiquinone oxidoreductase subunit B5, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8, NADH:ubiquinone oxidoreductase subunit B10, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial, NADH:ubiquinone oxidoreductase subunit S5, NADH:ubiquinone oxidoreductase subunit A3, NADH:ubiquinone oxidoreductase subunit B3, NADH dehydrogenase [ubiquinone] 1 subunit C2, NADH:ubiquinone oxidoreductase subunit B4, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13, NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6, NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, NADH:ubiquinone oxidoreductase subunit B9, NADH:ubiquinone oxidoreductase subunit B2, NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial, NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial, NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial, Uncharacterized protein, NADH dehydrogenase 1 alpha subcomplex
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Functional site
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1)
|
chain |
V1 |
residue |
203 |
type |
|
sequence |
P
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
2)
|
chain |
V1 |
residue |
358 |
type |
|
sequence |
S
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
3)
|
chain |
V1 |
residue |
359 |
type |
|
sequence |
C
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
4)
|
chain |
V1 |
residue |
360 |
type |
|
sequence |
G
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
5)
|
chain |
V1 |
residue |
361 |
type |
|
sequence |
Q
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
6)
|
chain |
V1 |
residue |
362 |
type |
|
sequence |
C
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
7)
|
chain |
V1 |
residue |
365 |
type |
|
sequence |
C
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
8)
|
chain |
V1 |
residue |
403 |
type |
|
sequence |
T
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
9)
|
chain |
V1 |
residue |
405 |
type |
|
sequence |
C
|
description |
binding site for residue SF4 V1 500
|
source |
: AC1
|
|
10)
|
chain |
V1 |
residue |
67 |
type |
|
sequence |
G
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
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11)
|
chain |
V1 |
residue |
68 |
type |
|
sequence |
R
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
12)
|
chain |
V1 |
residue |
69 |
type |
|
sequence |
G
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
13)
|
chain |
V1 |
residue |
71 |
type |
|
sequence |
A
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
14)
|
chain |
V1 |
residue |
78 |
type |
|
sequence |
K
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
15)
|
chain |
V1 |
residue |
96 |
type |
|
sequence |
N
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
16)
|
chain |
V1 |
residue |
98 |
type |
|
sequence |
D
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
17)
|
chain |
V1 |
residue |
99 |
type |
|
sequence |
E
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
18)
|
chain |
V1 |
residue |
100 |
type |
|
sequence |
G
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
19)
|
chain |
V1 |
residue |
187 |
type |
|
sequence |
G
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
20)
|
chain |
V1 |
residue |
188 |
type |
|
sequence |
E
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
21)
|
chain |
V1 |
residue |
189 |
type |
|
sequence |
E
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
22)
|
chain |
V1 |
residue |
223 |
type |
|
sequence |
A
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
23)
|
chain |
V1 |
residue |
224 |
type |
|
sequence |
N
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
|
24)
|
chain |
V1 |
residue |
227 |
type |
|
sequence |
T
|
description |
binding site for residue FMN V1 501
|
source |
: AC2
|
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25)
|
chain |
V1 |
residue |
180-195 |
type |
prosite |
sequence |
GAGAYICGEETALIES
|
description |
COMPLEX1_51K_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. GAGAYICGEETALIES
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source |
prosite : PS00644
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26)
|
chain |
V1 |
residue |
357-368 |
type |
prosite |
sequence |
ESCGQCTPCREG
|
description |
COMPLEX1_51K_2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. ESCGqCtPCReG
|
source |
prosite : PS00645
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