eF-site ID 6q9d-.A2.A5.A6.A7.A9.AA.AL.AM.S1.S2.S3.S4.S6.S7.S8.V1.V2.V3 PDB Code 6q9d Chain A2, A5, A6, A7, A9, AA, AL, AM, S1, S2, S3, S4, S6, S7, S8, V1, V2, V3 Title CI Peripheral Arm focused refinement from Ovine respiratory SC I+III2 Classification ELECTRON TRANSPORT Compound NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial Source ORGANISM_COMMON: Sheep; ORGANISM_SCIENTIFIC: Ovis aries; Sequence A2:  LGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPI LIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALEN VL A5:  KKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYR KYTEQITNEKLSIVKAEPDVKKLEEQLQGGQIEEVILQAE NELSLARKMIQWKPWEPLVEEPPASQWKWPI A6:  TSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDI SVKQGRDKVREMFKKNAHVTDPRVVDLLVIKGKMELEETI NVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP A7:  ASATRLIQGLRNWASGRDLQAKLQLRYQEISKRTQPPPKL PVGPSHRLSNNYYCARDGRREAMPPSIVMSSQSEKKAVSP APPIKRWELSQDEPYL A9:  LHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYLVNHLGR MGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDS IRRAVEHSNVVINLVGREWETKNFDFEDVFVKIPQAIAQV SKEAGVEKFIHISHLNADIKSSSKYLRNKAVGEKEVRETF PEATIIKPADIFGREDRFLNYFANIRSLGKKTVKQPVYIV DVTKGIINAIKDPDARGKTFAFVGPNRYLLFDLVQYVFAV AHRPFLWTTRDKVERIHTTDRTLPHLPGLEDLGVQATPLE LKAIEVLRRHRTYRSEIEDVQPA AA:  PLTLEGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDS LDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKK AL:  LKRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGN KYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEW HRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVP YSTTRKKIQEWVPPSTPYK AM:  VKQDMPPVGGYGPIDYKRNLPRR S1:  SNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHER LSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEK TKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGS DRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASE IAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNIIDICPV GALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTG EVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVR NEKGLLTHTTWEDALSRVAGMLQSCQGNDVAAIAGGLVDA EALIALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLN TTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLK VALIGSPVDLTYRYDHLGDSPKILQDIASGSHPFSQVLQE AKKPMVVLGSSALQRNDGAAILAAVSNIAQKIRTSSGVTG DWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKMLFLL GADGGCVTRQDLPKDCFIVYQGHHGDVGAPIADVILPGAA YTEKSATYVNTEGRAQQTKVAVMPPGLAREDWKIIRALSE IAGMTLPYDTLDQVRNRLEEVSPNLVRYDDVEGANYFQQA SELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMA KCVKAVTE S2:  SNLTLNFGPQHPGVLRLVMELSGEMVRKCDPHIGLLHRGT EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLN IQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPF FWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGL MDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTA EDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPI GSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPPGEIKVDD AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAI EAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSK GHMLADVVAIIGTQDIVFGEVDR S3:  TRPTVRPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFS ELEICIHPDGVIPVLTFLRDHSNAQFKSLADLTAVDIPTR QNRFEIVYNLLSLRFNSRIRVKTYTDELTPVESSVSVYKA ANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDF PLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAF PAYRQPPE S4:  TQLITVDEKLDITTLTGVPEEHIKTRKARIFVPARNNMQS GVNNTKKWKMEFDTRERWENPLMGWASTADPLSNLVLTFS TKEDAIAFAEKNGWSYDVEERKVPKPKSKSYGANFSWNKR TRVSTK S6:  GVRTSPTGEKVTHTGQVYDDEDYRRVRFVGRQKEVNENFA IDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETK TGTCGYCGLQFRQQH S7:  SRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMA APRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV YDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD IYVPGCPPTAEALLYGILQLQKKIKREKRLRIWYRR S8:  TYKYVNLREPSMDMKSVTDRAAQTLLWTELIRGLGMTLSY LFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIAC KLCEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCG FCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDK WEAEIAANIQADYLYR V1:  KTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEI LLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDG RPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRA MGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACG SGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPP FPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRE RNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVT GGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTG LGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREG VDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALG DGAAWPVQGLIRHFRPELEERMQRFAQQHQ V2:  ALFVHRDTPKNNPETPFDFTPENYKRIEAIVKNYPEGHKA AAVLPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVA TFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKL GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDL TPKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTE PPKGPGFGVQAG V3:  NTTYKNLQHHDYSTYTFLDLNLDLSKFRMPQPSSGRESPR H Description (1)  NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (E.C.1.6.99.3,7.1.1.2), NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial, NADH:ubiquinone oxidoreductase core subunit S1, NADH:ubiquinone oxidoreductase core subunit S2,NADH:ubiquinone oxidoreductase core subunit S2, NADH:ubiquinone oxidoreductase core subunit S3, NADH:ubiquinone oxidoreductase core subunit S7, NADH:ubiquinone oxidoreductase core subunit S8, NADH:ubiquinone oxidoreductase subunit V3, NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial, NADH:ubiquinone oxidoreductase subunit S4, NADH:ubiquinone oxidoreductase subunit A9, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, NADH:ubiquinone oxidoreductase subunit A6, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, Acyl carrier protein, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 Functional site 1) chain V1 residue 203 type sequence P description binding site for residue SF4 V1 500 source : AC1 2) chain V1 residue 358 type sequence S description binding site for residue SF4 V1 500 source : AC1 3) chain V1 residue 359 type sequence C description binding site for residue SF4 V1 500 source : AC1 4) chain V1 residue 360 type sequence G description binding site for residue SF4 V1 500 source : AC1 5) chain V1 residue 361 type sequence Q description binding site for residue SF4 V1 500 source : AC1 6) chain V1 residue 362 type sequence C description binding site for residue SF4 V1 500 source : AC1 7) chain V1 residue 365 type sequence C description binding site for residue SF4 V1 500 source : AC1 8) chain V1 residue 403 type sequence T description binding site for residue SF4 V1 500 source : AC1 9) chain V1 residue 404 type sequence I description binding site for residue SF4 V1 500 source : AC1 10) chain V1 residue 405 type sequence C description binding site for residue SF4 V1 500 source : AC1 11) chain V1 residue 67 type sequence G description binding site for residue FMN V1 501 source : AC2 12) chain V1 residue 68 type sequence R description binding site for residue FMN V1 501 source : AC2 13) chain V1 residue 69 type sequence G description binding site for residue FMN V1 501 source : AC2 14) chain V1 residue 71 type sequence A description binding site for residue FMN V1 501 source : AC2 15) chain V1 residue 73 type sequence F description binding site for residue FMN V1 501 source : AC2 16) chain V1 residue 78 type sequence K description binding site for residue FMN V1 501 source : AC2 17) chain V1 residue 96 type sequence N description binding site for residue FMN V1 501 source : AC2 18) chain V1 residue 98 type sequence D description binding site for residue FMN V1 501 source : AC2 19) chain V1 residue 184 type sequence Y description binding site for residue FMN V1 501 source : AC2 20) chain V1 residue 187 type sequence G description binding site for residue FMN V1 501 source : AC2 21) chain V1 residue 188 type sequence E description binding site for residue FMN V1 501 source : AC2 22) chain V1 residue 222 type sequence V description binding site for residue FMN V1 501 source : AC2 23) chain V1 residue 224 type sequence N description binding site for residue FMN V1 501 source : AC2 24) chain V1 residue 227 type sequence T description binding site for residue FMN V1 501 source : AC2 25) chain V2 residue 103 type sequence C description binding site for residue FES V2 300 source : AC3 26) chain V2 residue 105 type sequence T description binding site for residue FES V2 300 source : AC3 27) chain V2 residue 108 type sequence C description binding site for residue FES V2 300 source : AC3 28) chain V2 residue 144 type sequence C description binding site for residue FES V2 300 source : AC3 29) chain V2 residue 145 type sequence L description binding site for residue FES V2 300 source : AC3 30) chain V2 residue 146 type sequence G description binding site for residue FES V2 300 source : AC3 31) chain V2 residue 147 type sequence A description binding site for residue FES V2 300 source : AC3 32) chain V2 residue 148 type sequence C description binding site for residue FES V2 300 source : AC3 33) chain S1 residue 101 type sequence H description binding site for residue SF4 S1 801 source : AC4 34) chain S1 residue 104 type sequence D description binding site for residue SF4 S1 801 source : AC4 35) chain S1 residue 105 type sequence C description binding site for residue SF4 S1 801 source : AC4 36) chain S1 residue 108 type sequence C description binding site for residue SF4 S1 801 source : AC4 37) chain S1 residue 114 type sequence C description binding site for residue SF4 S1 801 source : AC4 38) chain S1 residue 117 type sequence Q description binding site for residue SF4 S1 801 source : AC4 39) chain S1 residue 205 type sequence V description binding site for residue SF4 S1 801 source : AC4 40) chain S1 residue 206 type sequence G description binding site for residue SF4 S1 801 source : AC4 41) chain S1 residue 153 type sequence C description binding site for residue SF4 S1 802 source : AC5 42) chain S1 residue 154 type sequence I description binding site for residue SF4 S1 802 source : AC5 43) chain S1 residue 156 type sequence C description binding site for residue SF4 S1 802 source : AC5 44) chain S1 residue 157 type sequence T description binding site for residue SF4 S1 802 source : AC5 45) chain S1 residue 159 type sequence C description binding site for residue SF4 S1 802 source : AC5 46) chain S1 residue 203 type sequence C description binding site for residue SF4 S1 802 source : AC5 47) chain S1 residue 205 type sequence V description binding site for residue SF4 S1 802 source : AC5 48) chain S1 residue 41 type sequence C description binding site for residue FES S1 803 source : AC6 49) chain S1 residue 42 type sequence Y description binding site for residue FES S1 803 source : AC6 50) chain S1 residue 50 type sequence G description binding site for residue FES S1 803 source : AC6 51) chain S1 residue 52 type sequence C description binding site for residue FES S1 803 source : AC6 52) chain S1 residue 53 type sequence R description binding site for residue FES S1 803 source : AC6 53) chain S1 residue 55 type sequence C description binding site for residue FES S1 803 source : AC6 54) chain S1 residue 69 type sequence C description binding site for residue FES S1 803 source : AC6 55) chain S2 residue 105 type sequence R description binding site for residue SF4 S7 300 source : AC7 56) chain S7 residue 53 type sequence A description binding site for residue SF4 S7 300 source : AC7 57) chain S7 residue 54 type sequence C description binding site for residue SF4 S7 300 source : AC7 58) chain S7 residue 55 type sequence C description binding site for residue SF4 S7 300 source : AC7 59) chain S7 residue 90 type sequence G description binding site for residue SF4 S7 300 source : AC7 60) chain S7 residue 117 type sequence G description binding site for residue SF4 S7 300 source : AC7 61) chain S7 residue 118 type sequence S description binding site for residue SF4 S7 300 source : AC7 62) chain S7 residue 119 type sequence C description binding site for residue SF4 S7 300 source : AC7 63) chain S7 residue 149 type sequence C description binding site for residue SF4 S7 300 source : AC7 64) chain S7 residue 150 type sequence P description binding site for residue SF4 S7 300 source : AC7 65) chain S8 residue 87 type sequence C description binding site for residue SF4 S8 201 source : AC8 66) chain S8 residue 88 type sequence P description binding site for residue SF4 S8 201 source : AC8 67) chain S8 residue 92 type sequence I description binding site for residue SF4 S8 201 source : AC8 68) chain S8 residue 116 type sequence C description binding site for residue SF4 S8 201 source : AC8 69) chain S8 residue 117 type sequence I description binding site for residue SF4 S8 201 source : AC8 70) chain S8 residue 118 type sequence Y description binding site for residue SF4 S8 201 source : AC8 71) chain S8 residue 119 type sequence C description binding site for residue SF4 S8 201 source : AC8 72) chain S8 residue 120 type sequence G description binding site for residue SF4 S8 201 source : AC8 73) chain S8 residue 122 type sequence C description binding site for residue SF4 S8 201 source : AC8 74) chain S8 residue 133 type sequence E description binding site for residue SF4 S8 201 source : AC8 75) chain S8 residue 77 type sequence C description binding site for residue SF4 S8 202 source : AC9 76) chain S8 residue 78 type sequence I description binding site for residue SF4 S8 202 source : AC9 77) chain S8 residue 79 type sequence A description binding site for residue SF4 S8 202 source : AC9 78) chain S8 residue 80 type sequence C description binding site for residue SF4 S8 202 source : AC9 79) chain S8 residue 81 type sequence K description binding site for residue SF4 S8 202 source : AC9 80) chain S8 residue 83 type sequence C description binding site for residue SF4 S8 202 source : AC9 81) chain S8 residue 126 type sequence C description binding site for residue SF4 S8 202 source : AC9 82) chain S8 residue 131 type sequence I description binding site for residue SF4 S8 202 source : AC9 83) chain S6 residue 59 type sequence C description binding site for residue ZN S6 300 source : AD1 84) chain S6 residue 68 type sequence H description binding site for residue ZN S6 300 source : AD1 85) chain S6 residue 71 type sequence V description binding site for residue ZN S6 300 source : AD1 86) chain S6 residue 84 type sequence C description binding site for residue ZN S6 300 source : AD1 87) chain S6 residue 87 type sequence C description binding site for residue ZN S6 300 source : AD1 88) chain A9 residue 27 type sequence T description binding site for residue NDP A9 401 source : AD2 89) chain A9 residue 28 type sequence G description binding site for residue NDP A9 401 source : AD2 90) chain A9 residue 29 type sequence F description binding site for residue NDP A9 401 source : AD2 91) chain A9 residue 30 type sequence L description binding site for residue NDP A9 401 source : AD2 92) chain A9 residue 50 type sequence R description binding site for residue NDP A9 401 source : AD2 93) chain A9 residue 95 type sequence V description binding site for residue NDP A9 401 source : AD2 94) chain A9 residue 96 type sequence G description binding site for residue NDP A9 401 source : AD2 95) chain A9 residue 97 type sequence R description binding site for residue NDP A9 401 source : AD2 96) chain A9 residue 132 type sequence I description binding site for residue NDP A9 401 source : AD2 97) chain A9 residue 134 type sequence H description binding site for residue NDP A9 401 source : AD2 98) chain A9 residue 145 type sequence Y description binding site for residue NDP A9 401 source : AD2 99) chain A9 residue 149 type sequence K description binding site for residue NDP A9 401 source : AD2 100) chain A9 residue 169 type sequence A description binding site for residue NDP A9 401 source : AD2 101) chain A9 residue 171 type sequence I description binding site for residue NDP A9 401 source : AD2 102) chain A9 residue 177 type sequence R description binding site for residue NDP A9 401 source : AD2 103) chain A6 residue 28 type sequence K description binding site for residue ZMP AA 101 source : AD3 104) chain A6 residue 32 type sequence R description binding site for residue ZMP AA 101 source : AD3 105) chain A6 residue 38 type sequence W description binding site for residue ZMP AA 101 source : AD3 106) chain A6 residue 62 type sequence V description binding site for residue ZMP AA 101 source : AD3 107) chain A6 residue 66 type sequence F description binding site for residue ZMP AA 101 source : AD3 108) chain A6 residue 69 type sequence N description binding site for residue ZMP AA 101 source : AD3 109) chain A6 residue 70 type sequence A description binding site for residue ZMP AA 101 source : AD3 110) chain A6 residue 81 type sequence L description binding site for residue ZMP AA 101 source : AD3 111) chain AA residue 43 type sequence D description binding site for residue ZMP AA 101 source : AD3 112) chain AA residue 44 type sequence S description binding site for residue ZMP AA 101 source : AD3 113) chain S8 residue 77-88 type prosite sequence CIACKLCEAVCP description 4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiACKlCEaVCP source prosite : PS00198 114) chain S8 residue 116-127 type prosite sequence CIYCGFCQEACP description 4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiACKlCEaVCP source prosite : PS00198 115) chain V1 residue 180-195 type prosite sequence GAGAYICGEETALIES description COMPLEX1_51K_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. GAGAYICGEETALIES source prosite : PS00644 116) chain S1 residue 105-117 type prosite sequence CPICDQGGECDLQ description COMPLEX1_75K_2 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. CPiCDqGGeCdLQ source prosite : PS00642 117) chain S1 residue 152-162 type prosite sequence RCIQCTRCIRF description COMPLEX1_75K_3 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. RCIqCtRCIrF source prosite : PS00643 118) chain V2 residue 134-152 type prosite sequence DKLFTLIEVECLGACVNAP description COMPLEX1_24K Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. DklFTlieveCLGaCvnAP source prosite : PS01099 119) chain S1 residue 38-55 type prosite sequence PRFCYHERLSVAGNCRMC description COMPLEX1_75K_1 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. PrfCYherlsvaGnCRmC source prosite : PS00641 120) chain V1 residue 357-368 type prosite sequence ESCGQCTPCREG description COMPLEX1_51K_2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. ESCGqCtPCReG source prosite : PS00645 121) chain AA residue 39-54 type prosite sequence DLGLDSLDQVEIIMAM description PHOSPHOPANTETHEINE Phosphopantetheine attachment site. DLGLDSLDQVEIIMAM source prosite : PS00012 122) chain AA residue 64-76 type prosite sequence DIDAEKLMCPQEI description EF_HAND_1 EF-hand calcium-binding domain. DIDAEKLMCpqEI source prosite : PS00018 123) chain S2 residue 83-94 type prosite sequence LHRGTEKLIEYK description COMPLEX1_49K Respiratory chain NADH dehydrogenase 49 Kd subunit signature. LHRGtEKLiEyK source prosite : PS00535 124) chain S3 residue 131-152 type prosite sequence EREIWDMFGVFFANHPDLRRIL description COMPLEX1_30K Respiratory chain NADH dehydrogenase 30 Kd subunit signature. EREiwDMFgvffanHpdlRrIL source prosite : PS00542 125) chain S7 residue 135-151 type prosite sequence GCDRIVPVDIYVPGCPP description COMPLEX1_20K Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. GcDRIVPVDIYvPgCPP source prosite : PS01150

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