eF-site ID 6ozl-B
PDB Code 6ozl
Chain B

click to enlarge
Title Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 2 min soak in Mn2+
Classification HYDROLASE
Compound Endonuclease V
Source (6OZL)
Sequence B:  RPPEETLSLWKGEQARLKARVVDRDTEAWQRDPSFSGLQK
VGGVDVSFVKGDSVRACASLVVLSYPELKVVYEDSRMVGL
KAPYVSGFLAFREVPFLVELVQRLQEKEPDLMPQVVLVDG
NGVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNA
LHKEKIVLLQAGGDTFPLIGSSGTVLGMALRSHDHSTKPL
YVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIRSREYI
RRTL
Description


Functional site

1) chain B
residue 145
type
sequence L
description binding site for residue GOL A 303
source : AC3

2) chain B
residue 147
type
sequence E
description binding site for residue GOL A 303
source : AC3

3) chain B
residue 52
type
sequence D
description binding site for residue MN B 301
source : AC6

4) chain B
residue 240
type
sequence D
description binding site for residue MN B 301
source : AC6

5) chain B
residue 52
type
sequence D
description binding site for residue MN B 302
source : AC7

6) chain B
residue 126
type
sequence D
description binding site for residue MN B 302
source : AC7

7) chain B
residue 226
type
sequence H
description binding site for residue PGE B 303
source : AC8

8) chain B
residue 228
type
sequence C
description binding site for residue PGE B 303
source : AC8

9) chain B
residue 229
type
sequence R
description binding site for residue PGE B 303
source : AC8

10) chain B
residue 52
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

11) chain B
residue 126
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

12) chain B
residue 91
type SITE
sequence Y
description Interaction with target DNA => ECO:0000250
source Swiss-Prot : SWS_FT_FI2


Display surface

Download
Links