eF-site ID 6ozl-A
PDB Code 6ozl
Chain A

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Title Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 2 min soak in Mn2+
Classification HYDROLASE
Compound Endonuclease V
Source (6OZL)
Sequence A:  ERPPEETLSLWKGEQARLKARVVDRDTEAWQRDPSFSGLQ
KVGGVDVSFVKSVRACASLVVLSYPELKVVYEDSRMVGLK
APYVSGFLAFREVPFLVELVQRLQEKEPDLMPQVVLVDGN
GVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNAL
HKEKIVLLQAGGDTFPLIGSSGTVLGMALRSHDHSTKPLY
VSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIRSREYIR
RTL
Description


Functional site

1) chain A
residue 52
type
sequence D
description binding site for residue MN A 301
source : AC1

2) chain A
residue 240
type
sequence D
description binding site for residue MN A 301
source : AC1

3) chain A
residue 52
type
sequence D
description binding site for residue MN A 302
source : AC2

4) chain A
residue 126
type
sequence D
description binding site for residue MN A 302
source : AC2

5) chain A
residue 32
type
sequence D
description binding site for residue GOL A 303
source : AC3

6) chain A
residue 38
type
sequence R
description binding site for residue GOL A 303
source : AC3

7) chain A
residue 225
type
sequence H
description binding site for residue PGE A 304
source : AC4

8) chain A
residue 226
type
sequence H
description binding site for residue PGE A 304
source : AC4

9) chain A
residue 228
type
sequence C
description binding site for residue PGE A 304
source : AC4

10) chain A
residue 229
type
sequence R
description binding site for residue PGE A 304
source : AC4

11) chain A
residue 45
type
sequence L
description binding site for residue NA A 305
source : AC5

12) chain A
residue 46
type
sequence Q
description binding site for residue NA A 305
source : AC5

13) chain A
residue 52
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 126
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

15) chain A
residue 91
type SITE
sequence Y
description Interaction with target DNA => ECO:0000250
source Swiss-Prot : SWS_FT_FI2


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