eF-site ID 6orq-ABCDEFGHIJKL
PDB Code 6orq
Chain A, B, C, D, E, F, G, H, I, J, K, L
Title Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch antibody Ab275MUR
Classification VIRAL PROTEIN/Immune System
Compound RC1 variant of HIV-1 Env glycoprotein gp41
Source (6ORQ)
Sequence A:  VSLGFLGAAGSTMGAASMTLTVQARNLLSHWGIKQLQARV
LAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLS
EIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDL
LALD
B:  AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWA
THACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIIS
LWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCS
FNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTS
AITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPC
PSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITN
NAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFG
DIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIR
FAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNND
SIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGL
ILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIE
PLGVAPTRCKRRV
C:  VSLGFLGAAGSTMGAASMTLTVQARNLLSHWGIKQLQARV
LAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLS
EIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDL
LALD
D:  EVQLQESGGDLVKPGGSLKLSCAASGFTFSRYGMSWVRQT
PDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLY
LQMSSLKSEDTAMYYCARHGITTVGVAMDYWGQGTYSHVS
SA
E:  IVMTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQ
QKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHP
VEEEDAATYYCQQSNEDPYTFGAGTKLELKR
F:  VSLGFLGAAGSTMGAASMTLTVQARNLLSHWGIKQLQARV
LAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLS
EIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDL
LALD
G:  AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWA
THACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIIS
LWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCS
FNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTS
AITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPC
PSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITN
NAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFG
DIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIR
FAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNND
SIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGL
ILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIE
PLGVAPTRCKRRV
H:  EVQLQESGGDLVKPGGSLKLSCAASGFTFSRYGMSWVRQT
PDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLY
LQMSSLKSEDTAMYYCARHGITTVGVAMDYWGQGTYSHVS
SA
I:  AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWA
THACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIIS
LWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCS
FNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTS
AITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPC
PSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITN
NAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFG
DIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIR
FAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNND
SIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGL
ILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIE
PLGVAPTRCKRRV
J:  EVQLQESGGDLVKPGGSLKLSCAASGFTFSRYGMSWVRQT
PDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLY
LQMSSLKSEDTAMYYCARHGITTVGVAMDYWGQGTYSHVS
SA
K:  IVMTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQ
QKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHP
VEEEDAATYYCQQSNEDPYTFGAGTKLELKR
L:  IVMTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQ
QKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHP
VEEEDAATYYCQQSNEDPYTFGAGTKLELKR
Description (1)  Envelope glycoprotein gp41, Envelope glycoprotein gp120, Ab275MUR antibody Fab heavy chain, Ab275MUR antibody Fab light chain


Functional site

1) chain D
residue 93-100
type prosite
sequence ARHGITTV
description THIOL_PROTEASE_HIS Eukaryotic thiol (cysteine) proteases histidine active site. ARHGITTVGVA
source prosite : PS00639


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