|
eF-site ID
|
6oq8-B |
PDB Code
|
6oq8 |
Chain
|
B |
|
click to enlarge
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Title
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Structure of the GTD domain of Clostridium difficile toxin B in complex with VHH 7F |
Classification
|
TOXIN |
Compound
|
Toxin B |
Source
|
(6OQ8) |
|
Sequence
|
B: |
GMSLVNRKQLEKMANVRFRTQEDEYVAILDALEEYHNMSE
NTVVEKYLKLKDINSLTDIYIDTYKKSGRNKALKKFKEYL
VTEVLELKNNNLTPVEKNLHFVWIGGQINDTAINYINQWK
DVNSDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFRE
NLNDPRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPE
LIIDDIVKTYLSNEYSKEIDELNTYIEESLNKITQNSGND
VRNFEEFKNGESFNLYEQELVERWNLAAASDILRISALKE
IGGMYLDVDMLPGIQPDLFESIEKPSSVTVDFWEMTKLEA
IMKYKEYIPEYTSEHFDMLDEEVQSSFESVLASKSDKSEI
FSSLGDMEASPLEVKIAFNSKGIINQGLISVKDSYCSNLI
VKQIENRYKILNNSLNPAISEDNDFNTTTNTFIDSIMAEA
NADNGRFMMELGKYLRVGFFPDVKTTINLSGPEAYAAAYQ
DLLMFKEGSMNIHLIEADLRNFEISKTNISQSTEQEMASL
WSFDDARAKAQFEEYKRNYFEGS
|
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Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
101 |
type |
BINDING |
sequence |
V
|
description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000269|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:6OQ7
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
2)
|
chain |
B |
residue |
269 |
type |
BINDING |
sequence |
S
|
description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000269|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:6OQ7
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
3)
|
chain |
B |
residue |
518 |
type |
BINDING |
sequence |
S
|
description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000269|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:6OQ7
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
4)
|
chain |
B |
residue |
139 |
type |
BINDING |
sequence |
N
|
description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
5)
|
chain |
B |
residue |
286 |
type |
BINDING |
sequence |
D
|
description |
BINDING => ECO:0000305|PubMed:31308519, ECO:0007744|PDB:6OQ5
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
6)
|
chain |
B |
residue |
288 |
type |
BINDING |
sequence |
D
|
description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000305|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:5UQT, ECO:0007744|PDB:6OQ7
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
7)
|
chain |
B |
residue |
515 |
type |
BINDING |
sequence |
E
|
description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000305|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:5UQT, ECO:0007744|PDB:6OQ7
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
|
|