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eF-site ID
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6oq8-B |
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PDB Code
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6oq8 |
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Chain
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B |
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click to enlarge
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Title
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Structure of the GTD domain of Clostridium difficile toxin B in complex with VHH 7F |
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Classification
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TOXIN |
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Compound
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Toxin B |
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Source
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(6OQ8) |
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Sequence
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B: |
GMSLVNRKQLEKMANVRFRTQEDEYVAILDALEEYHNMSE
NTVVEKYLKLKDINSLTDIYIDTYKKSGRNKALKKFKEYL
VTEVLELKNNNLTPVEKNLHFVWIGGQINDTAINYINQWK
DVNSDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFRE
NLNDPRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPE
LIIDDIVKTYLSNEYSKEIDELNTYIEESLNKITQNSGND
VRNFEEFKNGESFNLYEQELVERWNLAAASDILRISALKE
IGGMYLDVDMLPGIQPDLFESIEKPSSVTVDFWEMTKLEA
IMKYKEYIPEYTSEHFDMLDEEVQSSFESVLASKSDKSEI
FSSLGDMEASPLEVKIAFNSKGIINQGLISVKDSYCSNLI
VKQIENRYKILNNSLNPAISEDNDFNTTTNTFIDSIMAEA
NADNGRFMMELGKYLRVGFFPDVKTTINLSGPEAYAAAYQ
DLLMFKEGSMNIHLIEADLRNFEISKTNISQSTEQEMASL
WSFDDARAKAQFEEYKRNYFEGS
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Description
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Functional site
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|
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1)
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chain |
B |
| residue |
286 |
| type |
BINDING |
| sequence |
D
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| description |
BINDING => ECO:0000305|PubMed:31308519, ECO:0007744|PDB:6OQ5
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| source |
Swiss-Prot : SWS_FT_FI3
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|
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2)
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chain |
B |
| residue |
288 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000305|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:5UQT, ECO:0007744|PDB:6OQ7
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| source |
Swiss-Prot : SWS_FT_FI4
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|
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3)
|
chain |
B |
| residue |
515 |
| type |
BINDING |
| sequence |
E
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| description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000305|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:5UQT, ECO:0007744|PDB:6OQ7
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
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4)
|
chain |
B |
| residue |
101 |
| type |
BINDING |
| sequence |
V
|
| description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000269|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:6OQ7
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
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5)
|
chain |
B |
| residue |
269 |
| type |
BINDING |
| sequence |
S
|
| description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000269|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:6OQ7
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| source |
Swiss-Prot : SWS_FT_FI1
|
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6)
|
chain |
B |
| residue |
518 |
| type |
BINDING |
| sequence |
S
|
| description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0000269|PubMed:31308519, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN, ECO:0007744|PDB:6OQ7
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
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7)
|
chain |
B |
| residue |
139 |
| type |
BINDING |
| sequence |
N
|
| description |
BINDING => ECO:0000269|PubMed:16054646, ECO:0000269|PubMed:28433497, ECO:0007744|PDB:2BVL, ECO:0007744|PDB:2BVM, ECO:0007744|PDB:5UQM, ECO:0007744|PDB:5UQN
|
| source |
Swiss-Prot : SWS_FT_FI2
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