eF-site ID 6ojv-C
PDB Code 6ojv
Chain C

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Title Crystal structure of human thymidylate synthase delta(7-29) in complex with dUMP and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-L-glutamic acid
Classification TRANSFERASE/TRANSFERASE INHIBITOR
Compound Thymidylate synthase,Thymidylate synthase
Source (TYSY_HUMAN)
Sequence C:  SELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLR
DEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKI
WDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD
MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLP
LMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIA
SYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQ
LQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIK
MEMAV
Description


Functional site

1) chain C
residue 50
type
sequence R
description binding site for residue UMP C 600
source : AC5

2) chain C
residue 192
type
sequence L
description binding site for residue UMP C 600
source : AC5

3) chain C
residue 195
type
sequence C
description binding site for residue UMP C 600
source : AC5

4) chain C
residue 196
type
sequence H
description binding site for residue UMP C 600
source : AC5

5) chain C
residue 214
type
sequence Q
description binding site for residue UMP C 600
source : AC5

6) chain C
residue 215
type
sequence R
description binding site for residue UMP C 600
source : AC5

7) chain C
residue 216
type
sequence S
description binding site for residue UMP C 600
source : AC5

8) chain C
residue 217
type
sequence G
description binding site for residue UMP C 600
source : AC5

9) chain C
residue 218
type
sequence D
description binding site for residue UMP C 600
source : AC5

10) chain C
residue 226
type
sequence N
description binding site for residue UMP C 600
source : AC5

11) chain C
residue 256
type
sequence H
description binding site for residue UMP C 600
source : AC5

12) chain C
residue 258
type
sequence Y
description binding site for residue UMP C 600
source : AC5

13) chain C
residue 108
type
sequence I
description binding site for residue 2XB C 601
source : AC6

14) chain C
residue 112
type
sequence N
description binding site for residue 2XB C 601
source : AC6

15) chain C
residue 218
type
sequence D
description binding site for residue 2XB C 601
source : AC6

16) chain C
residue 221
type
sequence L
description binding site for residue 2XB C 601
source : AC6

17) chain C
residue 222
type
sequence G
description binding site for residue 2XB C 601
source : AC6

18) chain C
residue 258
type
sequence Y
description binding site for residue 2XB C 601
source : AC6

19) chain C
residue 311
type
sequence M
description binding site for residue 2XB C 601
source : AC6

20) chain C
residue 312
type
sequence A
description binding site for residue 2XB C 601
source : AC6

21) chain C
residue 218
type ACT_SITE
sequence D
description Nucleophile => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI1

22) chain C
residue 73
type BINDING
sequence L
description in other chain => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI2

23) chain C
residue 249
type BINDING
sequence I
description in other chain => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI2

24) chain C
residue 198
type BINDING
sequence L
description BINDING => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI3

25) chain C
residue 218
type BINDING
sequence D
description in other chain => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI4

26) chain C
residue 238
type BINDING
sequence A
description in other chain => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI4

27) chain C
residue 279
type BINDING
sequence L
description in other chain => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI4

28) chain C
residue 241
type BINDING
sequence T
description BINDING => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI5

29) chain C
residue 137
type MOD_RES
sequence F
description Phosphoserine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI6

30) chain C
residue 310
type CROSSLNK
sequence E
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI7


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