eF-site ID 6oju-A
PDB Code 6oju
Chain A

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Title Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-D-glutamic acid
Classification TRANSFERASE/TRANSFERASE INHIBITOR
Compound Thymidylate synthase,Thymidylate synthase
Source (TYSY_HUMAN)
Sequence A:  SELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLR
DEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKI
WDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD
MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLP
LMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIA
SYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQ
LQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIK
MEMAV
Description


Functional site

1) chain A
residue 50
type
sequence R
description binding site for residue UMP A 600
source : AC3

2) chain A
residue 195
type
sequence C
description binding site for residue UMP A 600
source : AC3

3) chain A
residue 196
type
sequence H
description binding site for residue UMP A 600
source : AC3

4) chain A
residue 214
type
sequence Q
description binding site for residue UMP A 600
source : AC3

5) chain A
residue 215
type
sequence R
description binding site for residue UMP A 600
source : AC3

6) chain A
residue 216
type
sequence S
description binding site for residue UMP A 600
source : AC3

7) chain A
residue 217
type
sequence G
description binding site for residue UMP A 600
source : AC3

8) chain A
residue 218
type
sequence D
description binding site for residue UMP A 600
source : AC3

9) chain A
residue 226
type
sequence N
description binding site for residue UMP A 600
source : AC3

10) chain A
residue 256
type
sequence H
description binding site for residue UMP A 600
source : AC3

11) chain A
residue 258
type
sequence Y
description binding site for residue UMP A 600
source : AC3

12) chain A
residue 77
type
sequence K
description binding site for residue D96 A 601
source : AC4

13) chain A
residue 80
type
sequence F
description binding site for residue D96 A 601
source : AC4

14) chain A
residue 108
type
sequence I
description binding site for residue D96 A 601
source : AC4

15) chain A
residue 109
type
sequence W
description binding site for residue D96 A 601
source : AC4

16) chain A
residue 112
type
sequence N
description binding site for residue D96 A 601
source : AC4

17) chain A
residue 192
type
sequence L
description binding site for residue D96 A 601
source : AC4

18) chain A
residue 218
type
sequence D
description binding site for residue D96 A 601
source : AC4

19) chain A
residue 221
type
sequence L
description binding site for residue D96 A 601
source : AC4

20) chain A
residue 222
type
sequence G
description binding site for residue D96 A 601
source : AC4

21) chain A
residue 224
type
sequence P
description binding site for residue D96 A 601
source : AC4

22) chain A
residue 225
type
sequence F
description binding site for residue D96 A 601
source : AC4

23) chain A
residue 258
type
sequence Y
description binding site for residue D96 A 601
source : AC4

24) chain A
residue 312
type
sequence A
description binding site for residue D96 A 601
source : AC4

25) chain A
residue 287
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI7

26) chain A
residue 292
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI7

27) chain A
residue 308
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI7

28) chain A
residue 195
type ACT_SITE
sequence C
description Nucleophile => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI1

29) chain A
residue 50
type BINDING
sequence R
description in other chain => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI2

30) chain A
residue 226
type BINDING
sequence N
description in other chain => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI2

31) chain A
residue 175
type BINDING
sequence R
description BINDING => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI3

32) chain A
residue 215
type BINDING
sequence R
description in other chain => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI4

33) chain A
residue 256
type BINDING
sequence H
description in other chain => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI4

34) chain A
residue 195
type BINDING
sequence C
description in other chain => ECO:0000250|UniProtKB:P45352
source Swiss-Prot : SWS_FT_FI4

35) chain A
residue 218
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI5

36) chain A
residue 312
type BINDING
sequence A
description BINDING => ECO:0000250|UniProtKB:P0A884
source Swiss-Prot : SWS_FT_FI5

37) chain A
residue 114
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI6


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