eF-site ID 6ogz-BC
PDB Code 6ogz
Chain B, C

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Title In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state
Classification viral protein/rna/transferase
Compound RNA (5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3')
Source ORGANISM_SCIENTIFIC: Rotavirus A;
Sequence B:  UAUAUAUAUAUAUAUAUA
C:  AUAUAUAUAUAUAUAUA
Description (1)  RNA-dependent RNA polymerase of rotavirus A, Inner capsid protein VP2/RNA Complex


Functional site

1) chain B
residue 599
type
ligand
sequence A
description binding site for residue UTP A 1101
source : AC1

2) chain C
residue 593
type
ligand
sequence A
description binding site for residue UTP A 1101
source : AC1

3) chain B
residue 599
type binding
ligand UTP: URIDINE 5'-TRIPHOSPHATE
sequence A
description URIDINE 5'-TRIPHOSPHATE binding site
source pdb_hetatom : UTP_6ogz_A_1101

4) chain C
residue 593-594
type binding
ligand UTP: URIDINE 5'-TRIPHOSPHATE
sequence AU
description URIDINE 5'-TRIPHOSPHATE binding site
source pdb_hetatom : UTP_6ogz_A_1101


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