Title
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In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state |
Classification
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viral protein/rna/transferase |
Compound
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RNA (5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') |
Source
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ORGANISM_SCIENTIFIC: Rotavirus A; |
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Sequence
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A: |
GKYNLILSEYLSFIYNSQSAVQIPIYYSSNSELENRCIEF
HSKCLENSKNGLSLKKLFVEYSDVIENATLLSILSYSYDK
YNAVERKLVKYAKGKPLEADLTVNELDYENNKITSELFPT
AEEYTDLLMDPAILTSLSSNLNAVMFWLEKHENDVAEKLK
IYKRRLDLFTIVASTVNKYGVPRHNAKYRYEYEVMKDKPY
YLVTWANSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLA
KLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVP
DQTFDELKQMLDNMRKAGLTDIPKMIQDWLVDCSIEKFPL
MAKIYSWSFHVGFRKQKMLDAALDQLKTEYTEDVDDEMYR
EYTMLIRDEVVKMLEEPVKHDDHLLQDSELAGLLSMSSAS
NGESRQLKFGRKTIFSTKKNMHVMDDMANGRYTPGIIPPV
NVDKPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKML
IYAKHTREYAEFYSQSNQLLSYGDVTRFLSNNSMVLYTDV
SQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLY
KQTQINLMDSYVQIPDGNVIKKIQYGAVASGEKQTKAANS
IANLALIKTVLSRISNKYSFATKIIRVDGDDNYAVLQFNT
EVTKQMVQDVSNDVRETYARMNTKVKALVSTVGIEIAKRY
IAGGKIFFRAGINLLNNEKKGQSTQWDQAAVLYSNYIVNR
LRGFETDREFILTKIMQMTSVAITGSLRLFPSERVLTTNS
TFKVFDSEDFIIEYGTTDDEVYIQRAFMSLSSQKSGIADE
IAASSTFKNYVSRLSEQLLFSKNNIVSRGIALTEKAKLNS
YAPISLEKRRAQISALLTMLQKPVTFKSSKITINDILRDI
KPFFTVNEAHLPIQYQKFMPTLPDNVQYIIQCIGSRTYQI
EDDGSKSAISRLISKYSVYKPSIEELYKVISLHENEIQLY
LISLGIPKIDADTYVGSKIYSQDKYRILESYVYNLLSINY
GCYQLFDFNSPDLEKLIRIPFKGKIPAVTFILHLYAKLEV
INHAIKNGSWISLFCNYPKSEMIKLWKKMWNITSLRSPYT
NA
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B: |
UAUAUAUAUAUAUAUAUA
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C: |
AUAUAUAUAUAUAUAUA
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E: |
QYEILQKTIPTFEPKESILKKLEDIKPEQVKKQTKLFRIF
EPRQLPVYRANGEKELRNRWYWKLKRDTLPDGDYDVREYF
LNLYDQVLTEMPDYLLLKDMAVENKNSRDAGKVVDSETAA
ICDAIFQDEETEGVVRRFIAEMRQRVQADRNVVNYPSILH
PIDHAFNEYFLQHQLVEPLNNDIIFNYIPERIRNDVNYIL
NMDRNLPSTARYIRPNLLQDRLNLHDNFESLWDTITTSNY
ILARSVVPDLKELVSTEAQIQKMSQDLQLEALTIQSETQF
LTGINSQAANDCFKTLIAAMLSQRTMSLDFVTTNYMSLIS
GMWLLTVVPNDMFIRESLVACQLAIINTIIYPAFGMQRMH
YRNGDPQTPFQIAEQQIQNFQVANWLHFVNNNQFRQVVID
GVLNQVLNDNIRNGHVVNQLMEALMQLSRQQFPTMPVDYK
RSIQRGILLLSNRLGQLVDLTRLLAYNYETLMACITMNMQ
HVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFHYYNV
NVNFHSNYNERINDAVAIITAANRLNLYQKKMKSIVEDFL
KRLQIFDISRVPDDQMYRLRDRLRLLPVEIRRLDIFNLIL
MNMEQIERASDKIAQGVIIAYRDMQLERDEMYGYVNIARN
LDGFQQINLEELMRTGDYAQITNMLLNNQPVALVGALPFI
TDSSVISLVAKLDATVFAQIVKLRKVDTLKPILYKINSDS
NDFYLVANYDWVPTSTTKVYKQIPQQFDFRASMHMLTSNL
TFTVYSDLLAFVSADTVEPINAVAFDNMRIMNEL
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F: |
TKEEHQKEVQYEILQKTIPTFEPKESILKKLEDIKPEQVK
KQTKLFRIFEPRQLPVYRANGEKELRNRWYWKLKRDTLPD
GDYDVREYFLNLYDQVLTEMPDYLLLKDMAVENKNSRDAG
KVVDSETAAICDAIFQDEETEGVVRRFIAEMRQRVQADRN
VVNYPSILHPIDHAFNEYFLQHQLVEPLNNDIIFNYIPER
IRNDVNYILNMDRNLPSTARYIRPNLLQDRLNLHDNFESL
WDTITTSNYILARSVVPDLKELVSTEAQIQKMSQDLQLEA
LTIQSETQFLTGINSQAANDCFKTLIAAMLSQRTMSLDFV
TTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIINTIIY
PAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFVNN
NQFRQVVIDGVLNQVLNDNIRNGHVVNQLMEALMQLSRQQ
FPTMPVDYKRSIQRGILLLSNRLGQLVDLTRLLAYNYETL
MACITMNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIPSP
QTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQKK
MKSIVEDFLKRLQIFDISRVPDDQMYRLRDRLRLLPVEIR
RLDIFNLILMNMEQIERASDKIAQGVIIAYRDMQLERDEM
YGYVNIARNLDGFQQINLEELMRTGDYAQITNMLLNNQPV
ALVGALPFITDSSVISLVAKLDATVFAQIVKLRKVDTLKP
ILYKINSDSNDFYLVANYDWVPTSTTKVYKQIPQQFDFRA
SMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMRIM
NEL
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G: |
NKEESKQLLEVLKPKESILKKLEDIKPEQVKKQTKLFRIF
EPRQLPVYRANGEKELRNRWYWKLKRDTLPDGDYDVREYF
LNLYDQVLTEMPDYLLLKDMAVENKNSRDAGKVVDSETAA
ICDAIFQDEETEGVVRRFIAEMRQRVQADRNVVNYPSILH
PIDHAFNEYFLQHQLVEPLNNDIIFNYIPERIRNDVNYIL
NMDRNLPSTARYIRPNLLQDRLNLHDNFESLWDTITTSNY
ILARSVVPDLKELVSTEAQIQKMSQDLQLEALTIQSETQF
LTGINSQAANDCFKTLIAAMLSQRTMSLDFVTTNYMSLIS
GMWLLTVVPNDMFIRESLVACQLAIINTIIYPAFGMQRMH
YRNGDPQTPFQIAEQQIQNFQVANWLHFVNNNQFRQVVID
GVLNQVLNDNIRNGHVVNQLMEALMQLSRQQFPTMPVDYK
RSIQRGILLLSNRLGQLVDLTRLLAYNYETLMACITMNMQ
HVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFHYYNV
NVNFHSNYNERINDAVAIITAANRLNLYQKKMKSIVEDFL
KRLQIFDISRVPDDQMYRLRDRLRLLPVEIRRLDIFNLIL
MNMEQIERASDKIAQGVIIAYRDMQLERDEMYGYVNIARN
LDGFQQINLEELMRTGDYAQITNMLLNNQPVALVGALPFI
TDSSVISLVAKLDATVFAQIVKLRKVDTLKPILYKINSDS
NDFYLVANYDWVPTSTTKVYKQIPQQFDFRASMHMLTSNL
TFTVYSDLLAFVSADTVEPINAVAFDNMRIMNEL
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H: |
LKTKEEHQKEVQYEILQKTIPTFEPKESILKKLEDIKPEQ
VKKQTKLFRIFEPRQLPVYRANGEKELRNRWYWKLKRDTL
PDGDYDVREYFLNLYDQVLTEMPDYLLLKDMAVENKNSRD
AGKVVDSETAAICDAIFQDEETEGVVRRFIAEMRQRVQAD
RNVVNYPSILHPIDHAFNEYFLQHQLVEPLNNDIIFNYIP
ERIRNDVNYILNMDRNLPSTARYIRPNLLQDRLNLHDNFE
SLWDTITTSNYILARSVVPDLKELVSTEAQIQKMSQDLQL
EALTIQSETQFLTGINSQAANDCFKTLIAAMLSQRTMSLD
FVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIINTI
IYPAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFV
NNNQFRQVVIDGVLNQVLNDNIRNGHVVNQLMEALMQLSR
QQFPTMPVDYKRSIQRGILLLSNRLGQLVDLTRLLAYNYE
TLMACITMNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIP
SPQTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQ
KKMKSIVEDFLKRLQIFDISRVPDDQMYRLRDRLRLLPVE
IRRLDIFNLILMNMEQIERASDKIAQGVIIAYRDMQLERD
EMYGYVNIARNLDGFQQINLEELMRTGDYAQITNMLLNNQ
PVALVGALPFITDSSVISLVAKLDATVFAQIVKLRKVDTL
KPILYKINSDSNDFYLVANYDWVPTSTTKVYKQIPQQFDF
RASMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMR
IMNEL
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I: |
PKESILKKLEDIKPEQVKKQTKLFRIFEPRQLPVYRANGE
KELRNRWYWKLKRDTLPDGDYDVREYFLNLYDQVLTEMPD
YLLLKDMAVENKNSRDAGKVVDSETAAICDAIFQDEETEG
VVRRFIAEMRQRVQADRNVVNYPSILHPIDHAFNEYFLQH
QLVEPLNNDIIFNYIPERIRNDVNYILNMDRNLPSTARYI
RPNLLQDRLNLHDNFESLWDTITTSNYILARSVVPDLKEL
VSTEAQIQKMSQDLQLEALTIQSETQFLTGINSQAANDCF
KTLIAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMF
IRESLVACQLAIINTIIYPAFGMQRMHYRNGDPQTPFQIA
EQQIQNFQVANWLHFVNNNQFRQVVIDGVLNQVLNDNIRN
GHVVNQLMEALMQLSRQQFPTMPVDYKRSIQRGILLLSNR
LGQLVDLTRLLAYNYETLMACITMNMQHVQTLTTEKLQLT
SVTSLCMLIGNATVIPSPQTLFHYYNVNVNFHSNYNERIN
DAVAIITAANRLNLYQKKMKSIVEDFLKRLQIFDISRVPD
DQMYRLRDRLRLLPVEIRRLDIFNLILMNMEQIERASDKI
AQGVIIAYRDMQLERDEMYGYVNIARNLDGFQQINLEELM
RTGDYAQITNMLLNNQPVALVGALPFITDSSVISLVAKLD
ATVFAQIVKLRKVDTLKPILYKINSDSNDFYLVANYDWVP
TSTTKVYKQIPQQFDFRASMHMLTSNLTFTVYSDLLAFVS
ADTVEPINAVAFDNMRIMNEL
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J: |
LKTKEEHQKEVQYEILQKTIPTFEPKESILKKLEDIKPEQ
VKKQTKLFRIFEPRQLPVYRANGEKELRNRWYWKLKRDTL
PDGDYDVREYFLNLYDQVLTEMPDYLLLKDMAVENKNSRD
AGKVVDSETAAICDAIFQDEETEGVVRRFIAEMRQRVQAD
RNVVNYPSILHPIDHAFNEYFLQHQLVEPLNNDIIFNYIP
ERIRNDVNYILNMDRNLPSTARYIRPNLLQDRLNLHDNFE
SLWDTITTSNYILARSVVPDLKELVSTEAQIQKMSQDLQL
EALTIQSETQFLTGINSQAANDCFKTLIAAMLSQRTMSLD
FVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIINTI
IYPAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFV
NNNQFRQVVIDGVLNQVLNDNIRNGHVVNQLMEALMQLSR
QQFPTMPVDYKRSIQRGILLLSNRLGQLVDLTRLLAYNYE
TLMACITMNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIP
SPQTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQ
KKMKSIVEDFLKRLQIFDISRVPDDQMYRLRDRLRLLPVE
IRRLDIFNLILMNMEQIERASDKIAQGVIIAYRDMQLERD
EMYGYVNIARNLDGFQQINLEELMRTGDYAQITNMLLNNQ
PVALVGALPFITDSSVISLVAKLDATVFAQIVKLRKVDTL
KPILYKINSDSNDFYLVANYDWVPTSTTKVYKQIPQQFDF
RASMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMR
IMNEL
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K: |
PKESILKKLEDIKPEQVKKQTKLFRIFEPRQLPVYRANGE
KELRNRWYWKLKRDTLPDGDYDVREYFLNLYDQVLTEMPD
YLLLKDMAVENKNSRDAGKVVDSETAAICDAIFQDEETEG
VVRRFIAEMRQRVQADRNVVNYPSILHPIDHAFNEYFLQH
QLVEPLNNDIIFNYIPERIRNDVNYILNMDRNLPSTARYI
RPNLLQDRLNLHDNFESLWDTITTSNYILARSVVPDLKEL
VSTEAQIQKMSQDLQLEALTIQSETQFLTGINSQAANDCF
KTLIAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMF
IRESLVACQLAIINTIIYPAFGMQRMHYRNGDPQTPFQIA
EQQIQNFQVANWLHFVNNNQFRQVVIDGVLNQVLNDNIRN
GHVVNQLMEALMQLSRQQFPTMPVDYKRSIQRGILLLSNR
LGQLVDLTRLLAYNYETLMACITMNMQHVQTLTTEKLQLT
SVTSLCMLIGNATVIPSPQTLFHYYNVNVNFHSNYNERIN
DAVAIITAANRLNLYQKKMKSIVEDFLKRLQIFDISRVPD
DQMYRLRDRLRLLPVEIRRLDIFNLILMNMEQIERASDKI
AQGVIIAYRDMQLERDEMYGYVNIARNLDGFQQINLEELM
RTGDYAQITNMLLNNQPVALVGALPFITDSSVISLVAKLD
ATVFAQIVKLRKVDTLKPILYKINSDSNDFYLVANYDWVP
TSTTKVYKQIPQQFDFRASMHMLTSNLTFTVYSDLLAFVS
ADTVEPINAVAFDNMRIMNEL
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L: |
LKTKEEHQKEVQYEILQKTIPTFEPKESILKKLEDIKPEQ
VKKQTKLFRIFEPRQLPVYRANGEKELRNRWYWKLKRDTL
PDGDYDVREYFLNLYDQVLTEMPDYLLLKDMAVENKNSRD
AGKVVDSETAAICDAIFQDEETEGVVRRFIAEMRQRVQAD
RNVVNYPSILHPIDHAFNEYFLQHQLVEPLNNDIIFNYIP
ERIRNDVNYILNMDRNLPSTARYIRPNLLQDRLNLHDNFE
SLWDTITTSNYILARSVVPDLKELVSTEAQIQKMSQDLQL
EALTIQSETQFLTGINSQAANDCFKTLIAAMLSQRTMSLD
FVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIINTI
IYPAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFV
NNNQFRQVVIDGVLNQVLNDNIRNGHVVNQLMEALMQLSR
QQFPTMPVDYKRSIQRGILLLSNRLGQLVDLTRLLAYNYE
TLMACITMNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIP
SPQTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQ
KKMKSIVEDFLKRLQIFDISRVPDDQMYRLRDRLRLLPVE
IRRLDIFNLILMNMEQIERASDKIAQGVIIAYRDMQLERD
EMYGYVNIARNLDGFQQINLEELMRTGDYAQITNMLLNNQ
PVALVGALPFITDSSVISLVAKLDATVFAQIVKLRKVDTL
KPILYKINSDSNDFYLVANYDWVPTSTTKVYKQIPQQFDF
RASMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMR
IMNEL
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M: |
IKIADEVKKSNKEESKQLLEVLKTKEEHQKEVQYEILQKT
IPTFEPKESILKKLEDIKPEQVKKQTKLFRIFEPRQLPVY
RANGEKELRNRWYWKLKRDTLPDGDYDVREYFLNLYDQVL
TEMPDYLLLKDMAVENKNSRDAGKVVDSETAAICDAIFQD
EETEGVVRRFIAEMRQRVQADRNVVNYPSILHPIDHAFNE
YFLQHQLVEPLNNDIIFNYIPERIRNDVNYILNMDRNLPS
TARYIRPNLLQDRLNLHDNFESLWDTITTSNYILARSVVP
DLKELVSTEAQIQKMSQDLQLEALTIQSETQFLTGINSQA
ANDCFKTLIAAMLSQRTMSLDFVTTNYMSLISGMWLLTVV
PNDMFIRESLVACQLAIINTIIYPAFGMQRMHYRNGDPQT
PFQIAEQQIQNFQVANWLHFVNNNQFRQVVIDGVLNQVLN
DNIRNGHVVNQLMEALMQLSRQQFPTMPVDYKRSIQRGIL
LLSNRLGQLVDLTRLLAYNYETLMACITMNMQHVQTLTTE
KLQLTSVTSLCMLIGNATVIPSPQTLFHYYNVNVNFHSNY
NERINDAVAIITAANRLNLYQKKMKSIVEDFLKRLQIFDI
SRVPDDQMYRLRDRLRLLPVEIRRLDIFNLILMNMEQIER
ASDKIAQGVIIAYRDMQLERDEMYGYVNIARNLDGFQQIN
LEELMRTGDYAQITNMLLNNQPVALVGALPFITDSSVISL
VAKLDATVFAQIVKLRKVDTLKPILYKINSDSNDFYLVAN
YDWVPTSTTKVYKQIPQQFDFRASMHMLTSNLTFTVYSDL
LAFVSADTVEPINAVAFDNMRIMNEL
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N: |
LKTKEEHQKEVQYEILQKTIPTFEPKESILKKLEDIKPEQ
VKKQTKLFRIFEPRQLPVYRANGEKELRNRWYWKLKRDTL
PDGDYDVREYFLNLYDQVLTEMPDYLLLKDMAVENKNSRD
AGKVVDSETAAICDAIFQDEETEGVVRRFIAEMRQRVQAD
RNVVNYPSILHPIDHAFNEYFLQHQLVEPLNNDIIFNYIP
ERIRNDVNYILNMDRNLPSTARYIRPNLLQDRLNLHDNFE
SLWDTITTSNYILARSVVPDLKELVSTEAQIQKMSQDLQL
EALTIQSETQFLTGINSQAANDCFKTLIAAMLSQRTMSLD
FVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIINTI
IYPAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFV
NNNQFRQVVIDGVLNQVLNDNIRNGHVVNQLMEALMQLSR
QQFPTMPVDYKRSIQRGILLLSNRLGQLVDLTRLLAYNYE
TLMACITMNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIP
SPQTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQ
KKMKSIVEDFLKRLQIFDISRVPDDQMYRLRDRLRLLPVE
IRRLDIFNLILMNMEQIERASDKIAQGVIIAYRDMQLERD
EMYGYVNIARNLDGFQQINLEELMRTGDYAQITNMLLNNQ
PVALVGALPFITDSSVISLVAKLDATVFAQIVKLRKVDTL
KPILYKINSDSNDFYLVANYDWVPTSTTKVYKQIPQQFDF
RASMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMR
IMNEL
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Description
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