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eF-site ID
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6odm-X |
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PDB Code
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6odm |
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Chain
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X |
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click to enlarge
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Title
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Herpes simplex virus type 1 (HSV-1) portal vertex-adjacent capsid/CATC, asymmetric unit |
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Classification
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VIRAL PROTEIN |
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Compound
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Major capsid protein |
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Source
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ORGANISM_COMMON: HHV-1; ORGANISM_SCIENTIFIC: Human herpesvirus 1 strain KOS; |
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Sequence
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X: |
YDVEFDALLGSYCNTLSLVRFLELGLSVACVCTKFPELAY
MNEGRVQFEVHQPLIARDGPHPIEQPTHNYMTKIIDRRAL
NAAFSLATEAIALLTHRQLRAIQQLARNVQAVLGAFERGT
ADQMLHVLLEKAPPLALLLPMQRYLDNTRVARATLVAELK
RSFCETSFFLGKAGHRREAVEAWLVDLTTATQPSVAVPRL
THADTRGRPVDGVLVTTAPIKQRLLQSFLKVEDTEADVPV
TYGEMVLNGANLVTALVMGKAVRSLDDVGRHLLEMQEEQL
DLNRQTLDELESAPQTTRVRADLVSIGEKLIFLEALEKRI
YAATNVPYPLVGAMDLTFVLPLGLFNPVMERFAAHAGDLV
PAPGHPDPRAFPPRQLFFWGKDRQVLRLSLEHAIGTVCHP
SLMNVDAAVGGLNRDPVEAANPYGAYVAAPAGPAADMQQL
FLNAWGQRLAHGRVRWVAEGQMTPEQFMQPDNANLALELH
PAFDFFVGVADVELPGGDVPPAGPGEIQATWRVVNGNLPL
ALCPAAFRDARGLELGVGRHAMAPATIAAVRGAFEDRNYP
AVFYLLQAAIHGSEHVFCALARLVVQCITSYWNNTRCAAF
VNDYSLVSYVVTYLGGDLPEECMAVYRDLVAHVEALAQLV
DDFTLTGPELGGQAQAELNHLMRDPALLPPLVWDCDALMR
RAALDRHRDCRVSAGGHDPVYAAACNVATADFNRNDGQLL
HNTQARAADAADDRPHRGADWTVHHKIYYYVMVPAFSRGR
CCTAGVRFDRVYATLQNMVVPEITPGEDCPSDPVTDPAHP
LHPANLVANTVNAMFHNGRVVVDGPAMLTLQVLAHNMAER
TTALLCSAAPDAGANTASTTNMRIFDGALHAGILLMAPQH
LDHTIQNGDYFYPLPVHALFAGADHVANAPNFPPALRDLS
RQVPLVPPALGANYFSSIRQPVVQHVRESAAGENALTYAL
MAGYFKISPVALHHQLKTGLHPGFGFTVVRQDRFVTENVL
FSERASEAYFLGQLQVARHETGGGVNFTLTQPRGNVDLGV
GYTAVVATATVRNPVTDMGNLPQNFYLGRGAPPLLDNAAA
VYLRNAVVAGNRLGPAQPVPVFGCAQVPRRAGMDHGQDAV
CEFIATPVSTDVNYFRRPCNPRGRAAGGVYAGDKEGDVTA
LMYDHGQSDPSRAFAATANPWASQRFSYGDLLYNGAYHLN
GASPVLSPCFKFFTSADIAAKHRCLERLIVETGSAVSTAT
AASDVQFKRPPGCRELVEDPCGLFQEAYPLTCASDPALLR
SARNGEAHARETHFAQYLVYDASPLKGLAL
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Description
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(1) |
Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, Triplex capsid protein 2, Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase (E.C.3.4.19.12,3.4.22.-)
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