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eF-site ID
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6odm-T |
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PDB Code
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6odm |
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Chain
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T |
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click to enlarge
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Title
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Herpes simplex virus type 1 (HSV-1) portal vertex-adjacent capsid/CATC, asymmetric unit |
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Classification
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VIRAL PROTEIN |
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Compound
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Major capsid protein |
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Source
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ORGANISM_COMMON: HHV-1; ORGANISM_SCIENTIFIC: Human herpesvirus 1 strain KOS; |
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Sequence
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T: |
RDPPGYRYAAAMVPTGSLLSTIEVASHRRLFDFFSRVRSD
ANSLYDVEFDALLGSYCNTLSLVRFLELGLSVACVCTKFP
ELAYMNEGRVQFEVHQPLIARDGPHPIEQPTHNYMTKIID
RRALNAAFSLATEAIALLTGEALDGTGISAHRQLRAIQQL
ARNVQAVLGAFERGTADQMLHVLLEKAPPLALLLPMQRYL
DNGRLATRVARATLVAELKRSFCETSFFLGKAGHRREAVE
AWLVDLTTATQPSVAVPRLTHADTRGRPVDGVLVTTAPIK
QRLLQSFLKVEDTEADVPVTYGEMVLNGANLVTALVMGKA
VRSLDDVGRHLLEMQEEQLDLNRQTLDELESAPQTTRVRA
DLVSIGEKLIFLEALEKRIYAATNVPYPLVGAMDLTFVLP
LGLFNPVMERFAAHAGDLVPAPGHPDPRAFPPRQLFFWGK
DRQVLRLSLEHAIGTVCHPSLMNVDAAVGGLNRDPVEAAN
PYGAYVAAPAGPAADMQQLFLNAWGQRLAHGRVRWVAEGQ
MTPEQFMQPDNANLALELHPAFDFFVGVADVELPGGDVPP
AGPGEIQATWRVVNGNLPLALCPAAFRDARGLELGVGRHA
MAPATIAAVRGAFEDRNYPAVFYLLQAAIHGSEHVFCALA
RLVVQCITSYWNNTRCAAFVNDYSLVSYVVTYLGGDLPEE
CMAVYRDLVAHVEALAQLVDDFTLTGPELGGQAQAELNHL
MRDPALLPPLVWDCDALMRRAALDRHRDCRVSAGGHDPVY
AAACNVATADFNRNDGQLLHNTQARAADAADDRPHRGADW
TVHHKIYYYVMVPAFSRGRCCTAGVRFDRVYATLQNMVVP
EITPGEDCPSDPVTDPAHPLHPANLVANTVNAMFHNGRVV
VDGPAMLTLQVLAHNMAERTTALLCSAAPDAGANTASTTN
MRIFDGALHAGILLMAPQHLDHTIQNGDYFYPLPVHALFA
GADHVANAPNFPPALRDLSRQVPLVPPALGANYFSSIRQP
VVQHVRESAAGENALTYALMAGYFKISPVALHHQLKTGLH
PGFGFTVVRQDRFVTENVLFSERASEAYFLGQLQVARHET
GGGVNFTLTQPRGNVDLGVGYTAVVATATVRNPVTDMGNL
PQNFYLGRGAPPLLDNAAAVYLRNAVVAGNRLGPAQPVPV
FGCAQVPRRAGMDHGQDAVCEFIATPVSTDVNYFRRPCNP
RGRAAGGVYAGDKEGDVTALMYDHGQSDPSRAFAATANPW
ASQRFSYGDLLYNGAYHLNGASPVLSPCFKFFTSADIAAK
HRCLERLIVETGSAVSTATAASDVQFKRPPGCRELVEDPC
GLFQEAYPLTCASDPALLRSARNGEAHARETHFAQYLVYD
ASPLKGLAL
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Description
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(1) |
Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, Triplex capsid protein 2, Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase (E.C.3.4.19.12,3.4.22.-)
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