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eF-site ID
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6odm-S |
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PDB Code
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6odm |
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Chain
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S |
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click to enlarge
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Title
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Herpes simplex virus type 1 (HSV-1) portal vertex-adjacent capsid/CATC, asymmetric unit |
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Classification
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VIRAL PROTEIN |
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Compound
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Major capsid protein |
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Source
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ORGANISM_COMMON: HHV-1; ORGANISM_SCIENTIFIC: Human herpesvirus 1 strain KOS; |
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Sequence
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S: |
GYRYAAAMVPTGSLLSTIEVASHRRLFDFFSRVRSDANSL
YDVEFDALLGSYCNTLSLVRFLELGLSVACVCTKFPELAY
MNEGRVQFEVHQPLIARDGPHPIEQPTHNYMTKIIDRRAL
NAAFSLATEAIALLTGEALDGTGISAHRQLRAIQQLARNV
QAVLGAFERGTADQMLHVLLEKAPPLALLLPMQRYLDNGR
LATRVARATLVAELKRSFCETSFFLGKAGHRREAVEAWLV
DLTTATQPSVAVPRLTHADTRGRPVDGVLVTTAPIKQRLL
QSFLKVEDTEADVPVTYGEMVLNTLDELESAPQTTRVRAD
LVSIGEKLIFLEALEKRIYAATNVPYPLVGAMDLTFVLPL
GLFNPVMERFAAHAGDLVPAPGHPDPRAFPPRQLFFWGKD
RQVLRLSLEHAIGTVCHPSLMNVDAAVGGLNRDPVEAANP
YGAYVAAPAGPAADMQQLFLNAWGQRLAHGRVRWVAEGQM
TPEQFMQPDNANLALELHPAFDFFVGVADVELPGGDVPPA
GPGEIQATWRVVNGNLPLALCPAAFRDARGLELGVGRHAM
APATIAAVRGAFEDRNYPAVFYLLQAAIHGSEHVFCALAR
LVVQCITSYWNNTRCAAFVNDYSLVSYVVTYLGGDLPEEC
MAVYRDLVAHVEALAQLVDDFTLTGPELGGQAQAELNHLM
RDPALLPPLVWDCDALMRRAALDRHRDCRVSAGGHDPVYA
AACNVATADFNRNDGQLLHNTQARAADAADDRPHRGADWT
VHHKIYYYVMVPAFSRGRCCTAGVRFDRVYATLQNMVVPE
ITPGEDCPSDPVTDPAHPLHPANLVANTVNAMFHNGRVVV
DGPAMLTLQVLAHNMAERTTALLCSAAPDAGANTASTTNM
RIFDGALHAGILLMAPQHLDHTIQNGDYFYPLPVHALFAG
ADHVANAPNFPPALRDLSRQVPLVPPALGANYFSSIRQPV
VQHVRESAAGENALTYALMAGYFKISPVALHHQLKTGLHP
GFGFTVVRQDRFVTENVLFSERASEAYFLGQLQVARHETG
GGVNFTLTQPRGNVDLGVGYTAVVATATVRNPVTDMGNLP
QNFYLGRGAPPLLDNAAAVYLRNAVVAGNRLGPAQPVPVF
GCAQVPRRAGMDHGQDAVCEFIATPVSTDVNYFRRPCNPR
GRAAGGVYAGDKEGDVTALMYDHGQSDPSRAFAATANPWA
SQRFSYGDLLYNGAYHLNGASPVLSPCFKFFTSADIAAKH
RCLERLIVETGSAVSTATAASDVQFKRPPGCRELVEDPCG
LFQEAYPLTCASDPALLRSARNGEAHARETHFAQYLVYDA
SPLKGLAL
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Description
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(1) |
Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, Triplex capsid protein 2, Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase (E.C.3.4.19.12,3.4.22.-)
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