eF-site ID 6njd-ABCD PDB Code 6njd Chain A, B, C, D click to enlarge Title Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby) complexed with Met-1 linked di-ubiquitin Classification HYDROLASE Compound Di-ubiquitin Source (6NJD) Sequence A:  GPLGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRS SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR B:  FLNQNCAEXXIKKAAQLILGSDLDFEYTRGIQDIQVDLGP AFXFSPDEEKTLWVSGKNQETLEKDLATLNKSSVYFFRTG TQGGAGHWQVLYYEAAKSGWVSYSSQSNHFQVTDSNGKLT ASGKGLLVPHANWGKENGNYAFLLVNASAENIIHAANFVY ILRTQNEVAAIEYCALNHEFHPEIKRTARAK C:  MQVKTLTGKTTLVEPSDTIENVKAKIQDKEGIPPDQQRLI FAGKQLEDGRTLSDYNIQTLHLVLRLRSSMQIFVKTLTGK TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE DGRTLSDYNIQKESTLHLVLR D:  NCAEXXIKKAAQLILGSDLDFEYTRGIQDIQVDLGPAFXF SPDEEKTLWVSGKNQETLEKDLATLNKSSVYFFRTGTQGG AGHWQVLYYEAAKSGWVSYSSQSNHFQVTDSNGKLTASGK GLLVPHANWGKENGNYAFLLVNASAENIIHAANFVYILRT QNEVAAIEYCALNHEFHPEIKRT Description (1)  Di-ubiquitin, RavD Functional site 1) chain A residue 108 type sequence D description binding site for residue MG A 201 source : AC1 2) chain D residue 185 type sequence H description binding site for residue MG A 201 source : AC1 3) chain B residue 185 type sequence H description binding site for residue MG B 301 source : AC2 4) chain B residue 186 type sequence E description binding site for residue MG B 301 source : AC2 5) chain C residue 108 type sequence D description binding site for residue MG B 301 source : AC2 6) chain A residue 27-52 type prosite sequence KAKIQDKEGIPPDQQRLIFAGKQLED description UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD source prosite : PS00299 7) chain A residue 103-128 type prosite sequence KAKIQDKEGIPPDQQRLIFAGKQLED description UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD source prosite : PS00299

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