eF-site ID 6nig-D
PDB Code 6nig
Chain D

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Title Crystal structure of the human TLR2-Diprovocim complex
Classification IMMUNE SYSTEM/AGONIST
Compound Toll-like receptor 2,Variable lymphocyte receptor B
Source (Q2YE02_EPTST)
Sequence D:  SLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITY
ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD
LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS
HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL
QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC
LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL
FQVMKLLNQISGLLELEFDDCTLNGVGNFRASDVIDPGKV
ETLTIRRLHIPRFYLFYDLSTLYSLTERVKRITVENSKVF
LVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSL
QTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMP
ETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNL
NLFSLNLPQLKELYISRNKLMTLPDASLLPMLLVLKISRN
QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL
NKNSQKEQGSAKCSGSGKPVRSIICP
Description


Functional site

1) chain D
residue 349
type SITE
sequence F
description Interaction with bacterial lipopeptide
source Swiss-Prot : SWS_FT_FI1

2) chain D
residue 114
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:15173186, ECO:0000269|PubMed:17889651
source Swiss-Prot : SWS_FT_FI2

3) chain D
residue 199
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:15173186, ECO:0000269|PubMed:17889651
source Swiss-Prot : SWS_FT_FI2

4) chain D
residue 442
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:15173186, ECO:0000269|PubMed:17889651
source Swiss-Prot : SWS_FT_FI2

5) chain D
residue 414
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:17889651
source Swiss-Prot : SWS_FT_FI3


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